PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_60457g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35755.9 Da    PI: 5.9026
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_60457g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18169223256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++k+q   Lee F ++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  MA_60457g0010 169 RKKLRLSKDQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTK 223
                    678899***********************************************98 PP
2HD-ZIP_I/II125.23e-40169259192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    +kk+rlsk+q++lLEesF e+++L+p++K++la+eL+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MA_60457g0010 169 RKKLRLSKDQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 259
                    69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.827165225IPR001356Homeobox domain
SMARTSM003892.4E-16167229IPR001356Homeobox domain
SuperFamilySSF466897.1E-18168233IPR009057Homeodomain-like
CDDcd000861.44E-16169226No hitNo description
Gene3DG3DSA:1.10.10.601.6E-17169223IPR009057Homeodomain-like
PfamPF000462.1E-15169223IPR001356Homeobox domain
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
SMARTSM003402.8E-21225268IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-11225259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEETKNKPRG LERLKTFASD DMTGLALGVG VDLSMAMPAT PLQEDDQKSV QLRLEPLTFR  60
PIAARVGTVP APSAPFLWFM SKNCREEVTV AGTNPSGVVR GAIDMNRVPS TNEAEYSSVF  120
QADALRAVEN GPMVVKRERE RAFDLEAERD RTCDVSSRTS DEEEIGSTRK KLRLSKDQSA  180
LLEESFLEHS TLNPKQKNAL AKELNLQPRQ VEVWFQNRRA RTKLKQTEVD CEVLKRCCEN  240
LTEENRRLQK ELQELRALKA VPPQCVIGQD NYYMPLPATT LTMCPSCERP IDMSVLMGFT  300
HSVPLNNLPI ADVLGALAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173TRKKLRL
2217225RRARTKLKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1008010.0BT100801.1 Picea glauca clone GQ0045_B13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379713.16e-79homeobox-leucine zipper protein HAT4-like
TrEMBLA9NX561e-173A9NX56_PICSI; Uncharacterized protein
STRINGPP1S42_219V6.12e-78(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-67homeobox from Arabidopsis thaliana