PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25714A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 710aa    MW: 75869.2 Da    PI: 5.9307
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25714AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.33.2e-31523607186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+
  Oropetium_20150105_25714A 523 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSSRMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PSQGKTCPYFDE 605
                                8*********************************************************************8.667779****** PP

                   trihelix  85 le 86 
                                l+
  Oropetium_20150105_25714A 606 LD 607
                                98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0031520582IPR001005SANT/Myb domain
PROSITE profilePS500907.248522580IPR017877Myb-like domain
CDDcd122031.02E-29522587No hitNo description
PfamPF138373.5E-23522609No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGAF AMSAPPPPQQ PAQPPAPAGG QELGGPFRYQ PLHHHAMPPQ  60
HHHHHXXXXX XXXXXXXXAG AGIPFTQQLL HQAAAAAGHH PHLQLFXXXX XXXXXXKPQP  120
QQQQTSVPTR WPPQHHAHPH PHPHHHLGFD VEAAVPESSG TSGGAAPPGV PPFLAAAMNF  180
KLGVDGGGGS GATGGTDDAL NDGGAGGSGM MLHVGADDEA ATESRLRRWP GDEEASIKEP  240
TWRPLDIDYL HSTSSSKRVG KEKAATPESP APAPXXXXXX XXXSNYFKKG DDDNAAAAAA  300
AAAAAAGGGN YKLFSELEAI YKPGSGGPQT GSGSGLTGDD NAILEPTIPE LPTGAAAATA  360
DAPQLNTSET SAGEDVAAVV QPQQPSSERR KRKRRRQEQL SASSSFFERL VQRLMEHQES  420
LHRQFLDAME RRERERAARD EAWRRQEADK FAREAAARAQ DRASAAAREA AIIAYLEKLS  480
GESISLPPPP PDDIAVGKEI VAYEGGGGDA AAGGALHLSS SSRWPKHEVE ALIRVRTGLE  540
GRFQEPGLKG PLWEEVSSRM AAAGYGRSAK RCKEKWENIN KYFRKAKESG KKRPSQGKTC  600
PYFDELDRLY SRSSNAANGN AAEGKASSEL LDAVVKYPEG PPGFVFDDRD EDDQNNNEAK  660
RSQAAEDDGN KQAAAAAHQD DDDGNGEDDD DIGGRGRAVE DPPEISHSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393RRKRKR
2389394RKRKRR
3389395RKRKRRR
4390395KRKRRR
5391395RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25714A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407371e-112BT040737.1 Zea mays full-length cDNA clone ZM_BFc0121H15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A0A9A7X80.0A0A0A9A7X8_ARUDO; Uncharacterized protein
STRINGONIVA02G00390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-37Trihelix family protein