PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24908A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 482aa    MW: 52397.8 Da    PI: 5.0776
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24908AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.7e-25107207299
                                EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 k+lt+sd+++ g +++p+++ae++         ++ +  tl+++d  g++W++++iyr++++r++lt+GW++Fv+a+ L +gD
  Oropetium_20150105_24908A 107 AKQLTQSDANNGGGFSVPRHCAESIfpkldleADPPVQ--TLVMRDIAGNEWRFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGD 188
                                599**************************995444444..9******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 vvF+  +r++++l+++++r+
  Oropetium_20150105_24908A 189 HVVFM--RRDDGQLLLGLRRE 207
                                *****..56899999999986 PP
2Auxin_resp51.25.5e-18234304169
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdl 69 
                                a++ a+++s+F+v ++Pr ++ eFvv++++ve+a+ + + +Gm ++m+ +e ed ++ ++ +Gtv g+++ 
  Oropetium_20150105_24908A 234 AVRLATEGSPFTVAFYPRLGAGEFVVPRKEVEDAIGSTWDPGMLVRMQiVEPEDGRRSEWaTGTVNGLHAN 304
                                6788999****************************************945*****************9973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-29100230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-33104208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.774106208IPR003340B3 DNA binding domain
SMARTSM010191.3E-19106208IPR003340B3 DNA binding domain
PfamPF023623.9E-22107207IPR003340B3 DNA binding domain
CDDcd100172.03E-21108206No hitNo description
PfamPF065072.8E-13234313IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAALVDTAVW LACAVPFSRL PTVGSQVYYF PHGHAEQCPK PLPGSLPKPH LFPCTVTAVR  60
LDADAKTNEV FAEVTLQPGP HRGPPASSSS SSAADDNNHD DSICYCAKQL TQSDANNGGG  120
FSVPRHCAES IFPKLDLEAD PPVQTLVMRD IAGNEWRFRH IYRGTPRRHL LTTGWSKFVN  180
AKLLVAGDHV VFMRRDDGQL LLGLRREPRY NLHDERNRNN NVRARVPPED VLEAVRLATE  240
GSPFTVAFYP RLGAGEFVVP RKEVEDAIGS TWDPGMLVRM QIVEPEDGRR SEWATGTVNG  300
LHANIWRAVE VDWDSSAPTA LTKSSRFVNG WQLQFIGFAP LLKRFRMVDP PCSAAPIPAG  360
MQGARQTAFD DAPAPPSSSS ATMTTQLLFP SPVEDISGAG GSEILDPEFG SPPSNSVNML  420
PPNNNLXXXX XXXXXXXXTR SIQLFGTTIV TPHAAADGAS EEANNEVPDG VVDENVEQDD  480
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-56431450371Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24908A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-133ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A2T7D2930.0A0A2T7D293_9POAL; Auxin response factor
STRINGSi021833m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-75auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]