PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16186A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 689aa    MW: 75054.5 Da    PI: 7.8253
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16186AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24114215199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +g
  Oropetium_20150105_16186A 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAG 195
                                89****************************996555555..8999*************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF+  +++++ l+v+++r+
  Oropetium_20150105_16186A 196 DSIVFM--RTENGDLCVGIRRA 215
                                ******..4588999****997 PP
2Auxin_resp116.22.9e-38274357183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a ++++FevvY+Prast+eF+vk+  v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Oropetium_20150105_16186A 274 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 357
                                688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-37105219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-29109216IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-21113214No hitNo description
SMARTSM010193.4E-21114216IPR003340B3 DNA binding domain
PfamPF023622.4E-22114215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999114216IPR003340B3 DNA binding domain
PfamPF065075.8E-33274357IPR010525Auxin response factor
PROSITE profilePS5174521.627602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MERESDKSLD PQLWHACAGG MVQMPPVHSK VYYFPQGHAE HAQGPVELPA GRVPALVLCR  60
VAGVRYMADP DTDEVYAKIR LAPVRPNEPG YAGDADDGIG AAAAAAQEDK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFLHHHP PPPPGANYGG  240
FSMFLRAEED GNKMMATTRG KVRVRVRPEE VVEAANLAVS GQPFEVVYYP RASTPEFCVK  300
AGAVRAAMRT QWCSGMRFKM AFETEDSSRI SWFMGTVSAV QVADPIRWPN SPWRLLQVTW  360
DEPDLLQNVK RVSPWLVELV SNMPAIHLAP FSPPRKKLCI PMYSDLPLDG HQFPTPMFHG  420
SPLGRGVGPM CYFPDGTPAA GIQGARHAQF GISLSDLHLN KLQSTLSPHH GLHHPLDHGM  480
QPRIAAGLII GHPAARDDIS CLLTIGTTPQ NKKPADAKKV ATPRQLMLFG KPILTEQQIS  540
LGDVHLPAAA KKSPSDSNAE KTVSNSDISS PGSNQDATTE NLSSGGHPLC RDNKLLDLGL  600
ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY QRLADMFGIE KDELMSHVFY RDASGTLKHT  660
GDKPFSEFTK TARRLTILTE TSGGSLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78937851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16186A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A3L6S3T80.0A0A3L6S3T8_PANMI; Auxin response factor
STRINGORGLA06G0209500.10.0(Oryza glaberrima)
STRINGOBART06G25230.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]