PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12124A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 731aa    MW: 77952.2 Da    PI: 6.6258
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12124AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64e-22126227199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g  W++++iyr++++r++lt+GW++Fv  ++L++g
  Oropetium_20150105_12124A 126 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQ--HVYARDVHGVDWKFRHIYRGTPRRHLLTTGWSHFVGRKKLQAG 207
                                89*********************999****997666666..6****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + ++++ +v+++r+
  Oropetium_20150105_12124A 208 DSIVFL--RGEDGQVHVGLRRA 227
                                ******..4489999***9996 PP
2Auxin_resp107.51.4e-35277360183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a+ +++Fevv++Pra+++eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv++v++++pvrWp S+Wr+L+
  Oropetium_20150105_12124A 277 AARLAAAGQPFEVVHYPRACSPEFCVRASAVRAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVAAVQAAEPVRWPLSPWRLLE 360
                                678999***************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-35117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-30121229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-18125226No hitNo description
PfamPF023624.8E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224126228IPR003340B3 DNA binding domain
SMARTSM010192.6E-18126228IPR003340B3 DNA binding domain
PfamPF065071.9E-30277359IPR010525Auxin response factor
PROSITE profilePS5174516.369643724IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MLAFEELAGG AGGGGQEGGV DAQLWLACAG SMCTVPPVGA AVYYFPQGHA EQASAAVDLS  60
AARVPPFVPC RVVSVRHMAD SENDEVFAKI RLVPLRPGEP VADVGEAAAE AMRGDDHQQA  120
NKPASFAKTL TQSDANNGGG FSVPRFCAET IFPELDYRAE PPVQHVYARD VHGVDWKFRH  180
IYRGTPRRHL LTTGWSHFVG RKKLQAGDSI VFLRGEDGQV HVGLRRAKRA GFGDEGGSSS  240
FALSGWDPYR GGLARNATTS SSSSSSGKVP AEDVLNAARL AAAGQPFEVV HYPRACSPEF  300
CVRASAVRAA MQVQWCPGMR FKMAFETEDS SRISWFMGTV AAVQAAEPVR WPLSPWRLLE  360
VTWDEPELLQ NVKRVCPWLV ELVSSMPNLH LPSFSPPRKK PRIPPFAFDG PQQLFDPAAF  420
TTPHALPPQL LHDQXXXXXX XXXGGGFIPF FPFPESSAAA GIQGARHAQF ASSFSDLHIG  480
NLQQSLLFSA IRVPTGTTDQ HHHHAPLAPP RISTDLTIGG SPRARQDAPP CSPPSSGAAK  540
RKAADDVKPP PPPQGILLFG RTILTEEQIK GSGGRSSPAA STGGSKTVDS DAEKAPNSSE  600
GSGSGSGVIQ GSSPTKMNST WTLEWSADNS GSQSSASEFA LEPGQCKVFV ESDAVGRNLD  660
LSALGSFEEL FARLCDMFCI DDAELRSHVL YRTASGGDVK HVGDEPFSAF VKSARRITIL  720
TDAGSDNTGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-801438145388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12124A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164753.10.0auxin response factor 8-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A3B6C9Y20.0A0A3B6C9Y2_WHEAT; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16