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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100252780021 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 221aa MW: 24510 Da PI: 10.7764 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27 | 1e-08 | 9 | 45 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+++d+ +++G g+Wk I+r+ +R+ q+ s+ qky
Ote100252780021|100252780021 9 RFLDGLERFGRGNWKNISRYSVRTRSNSQVASHAQKY 45
8***********************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 1.17E-9 | 7 | 50 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.7E-10 | 8 | 48 | IPR006447 | Myb domain, plants |
| CDD | cd00167 | 6.87E-5 | 8 | 46 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 9 | 47 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 221 aa Download sequence Send to blast |
MLVSTWYRRF LDGLERFGRG NWKNISRYSV RTRSNSQVAS HAQKYFNRLS SGKEGKRLSI 60 NDITTVDPEK LPALEKATTS CKGKSKSINA GTAKEVLTRS FEKGSMRAKN QLLPQLMPKR 120 SKRASIVDGF PMKASTEMGN KLQVKRARSE TGFQLLPPPP FVDPPFSGQT IAGPSFSSTT 180 CKKPSPPFAT QGPSIRGPTE DDFGSTDIMD LDLSMFPHFL D |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA15159 | 4 | 6 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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