PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100226490211

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Nin-like

Protein Properties

Length: 892aa MW: 100154 Da PI: 6.9814

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100226490211	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.9	6.1e-16	597	623	26	52
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkiksl 52 vc+T+LKriCRq+GI RWP+Rkik++ Ote100226490211\|100226490211 597 AVCPTTLKRICRQHGITRWPSRKIKKV 623 59***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.149	545	643	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-13	598	623	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.43E-21	783	878	No hit	No description
PROSITE profile	PS51745	22.891	793	876	IPR000270	PB1 domain
SMART	SM00666	2.5E-24	793	876	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.2E-22	794	873	No hit	No description
Pfam	PF00564	2.5E-17	794	875	IPR000270	PB1 domain
CDD	cd06407	2.90E-39	794	873	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MLGATLDFTL MDDLFYDGFW LETTTDEPNF WQPSSTGSTD FNPTSFFFPS TETSLTTNPN 60 HQTFLKESEK TSILGQPPFI SQEMDDFSGN RAPTHNPSIP SVSLGQSTDF MFEETEVNKR 120 LWVAPTRNPI RAVSVKKRLV QAINHLKNSI TEKDVLVQIW VPVKRGGKQV LTTNNQPFSL 180 NPNCKNLQEY RDVSRTYHFA ADEDSKESAG LPGRVFLKKL PEWTPDVRFF KREEYPRVNY 240 AQQFDVRGSL ALPVFERGSG KCLGVVEIVT TSLKVNYRPE LENICRALEA VDLKSSDMAQ 300 GPTNVEDWNE SYQGVLMEIR NVLRCVCDAH KLPLAQTWAP CIQQRKGGCR HSDENFTRCV 360 STVDSACYVA DQDVTNFHEA HVSRXXXXXX XXFSKTEYPL AHHARVFHLH AAVAIRLRST 420 YTGNADFVLE FFLPINCREA EDQRQMLDSL SSVVERTCQS LRVVTDQELA QEMRSDDGKN 480 PTVEDFPPKE PSTGAASWIT EMMDSQQKGK GVAVGLGYQK EEPREFNVTT PWDKPGVEFS 540 QMPVFPENEQ RHSGSKDGNG NFSFTTGAKT NTEKRRTKTX XXXXXXCKFL LFLIPVAVCP 600 TTLKRICRQH GITRWPSRKI KKVGHSLKKL QLVIDSVQGT EGSIQLSSFY NNFPELVSPD 660 APGKSQLPTS IMSGQLQQQN TPPEGNLLSP ATTTSKSPTS SGSHSSSSSY CCSTGVKQSS 720 FPVNGTSSGD ALSAAQNEGV LKRARSDAEL HQLGQEDSKL LVRSYSQKML SDRAPNEPLP 780 VPNNSSKEHN VGYFRVKAAL GDEKIRLTLQ PQWRFRELQQ EVLRRFNVDS GSRVDLKYLD 840 DDHEWVLLTC DADLEECIDI HRSLKSRTIR LSLSQAYHHP SLGSSFGSSG PY

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MLGATLDFTL MDDLFYDGFW LETTTDEPNF WQPSSTGSTD FNPTSFFFPS TETSLTTNPN  60
HQTFLKESEK TSILGQPPFI SQEMDDFSGN RAPTHNPSIP SVSLGQSTDF MFEETEVNKR  120
LWVAPTRNPI RAVSVKKRLV QAINHLKNSI TEKDVLVQIW VPVKRGGKQV LTTNNQPFSL  180
NPNCKNLQEY RDVSRTYHFA ADEDSKESAG LPGRVFLKKL PEWTPDVRFF KREEYPRVNY  240
AQQFDVRGSL ALPVFERGSG KCLGVVEIVT TSLKVNYRPE LENICRALEA VDLKSSDMAQ  300
GPTNVEDWNE SYQGVLMEIR NVLRCVCDAH KLPLAQTWAP CIQQRKGGCR HSDENFTRCV  360
STVDSACYVA DQDVTNFHEA HVSRXXXXXX XXFSKTEYPL AHHARVFHLH AAVAIRLRST  420
YTGNADFVLE FFLPINCREA EDQRQMLDSL SSVVERTCQS LRVVTDQELA QEMRSDDGKN  480
PTVEDFPPKE PSTGAASWIT EMMDSQQKGK GVAVGLGYQK EEPREFNVTT PWDKPGVEFS  540
QMPVFPENEQ RHSGSKDGNG NFSFTTGAKT NTEKRRTKTX XXXXXXCKFL LFLIPVAVCP  600
TTLKRICRQH GITRWPSRKI KKVGHSLKKL QLVIDSVQGT EGSIQLSSFY NNFPELVSPD  660
APGKSQLPTS IMSGQLQQQN TPPEGNLLSP ATTTSKSPTS SGSHSSSSSY CCSTGVKQSS  720
FPVNGTSSGD ALSAAQNEGV LKRARSDAEL HQLGQEDSKL LVRSYSQKML SDRAPNEPLP  780
VPNNSSKEHN VGYFRVKAAL GDEKIRLTLQ PQWRFRELQQ EVLRRFNVDS GSRVDLKYLD  840
DDHEWVLLTC DADLEECIDI HRSLKSRTIR LSLSQAYHHP SLGSSFGSSG PY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551595.1	0.0	LOW QUALITY PROTEIN: protein NLP2
TrEMBL	A0A4D8ZGK1	0.0	A0A4D8ZGK1_SALSN; Uncharacterized protein
STRING	Migut.B00011.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67