PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100209170051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 185aa MW: 20006.8 Da PI: 8.5888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100209170051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	2e-41	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vh++FGasnv+k+l ++ e +r da++slvyeA++r+rdP+yG++g i+ Ote100209170051\|100209170051 15 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHRVFGASNVSKMLMEVAEPQRADAANSLVYEANVRLRDPIYGCMGAIT 95 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+ael+++++e Ote100209170051\|100209170051 96 TLQHQIKTLQAELNAVRAE 114 *************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.671	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-41	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MGRRNVFGSL NTSTPCAACK LLRRRCAEEC PFSPYFSPHE PHKFAAVHRV FGASNVSKML 60 MEVAEPQRAD AANSLVYEAN VRLRDPIYGC MGAITTLQHQ IKTLQAELNA VRAEIVRYKY 120 RDAANSIIAS TNAAVAVSVA EQPQAPPTPP AIVVSAASSA PCLYTSPSST ASYSSISNNH 180 MPFFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	11	118	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	11	118	7	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839914.1	2e-91	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	4e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A4D8YJA1	1e-100	A0A4D8YJA1_SALSN; Uncharacterized protein
STRING	Migut.N00746.1.p	7e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]