PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100188850061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 318aa    MW: 34327.7 Da    PI: 8.8327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100188850061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-121036127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  +++++C++++rtG Ck+ ++CkF+H++
  Ote100188850061|100188850061 10 PGEPPCQYYLRTGACKFASSCKFNHPK 36
                                  5899*********************96 PP
2zf-CCCH41.32.6e-13180204327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++ C++++rtG CkyG++C+++H+p
  Ote100188850061|100188850061 180 QPDCKYYMRTGDCKYGSSCRYNHPP 204
                                   789********************97 PP
3zf-CCCH30.18.4e-10225249226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +   C+f+++ G+Ck+G +CkF H+
  Ote100188850061|100188850061 225 GVQACSFYMQKGHCKFGRTCKFDHP 249
                                   5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-6936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225937IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-81136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-51337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-41435IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817177205IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10180204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5183203IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399223251IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7225249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6225254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
LGVGEYPERP GEPPCQYYLR TGACKFASSC KFNHPKNAGG SLTNAPLNIY GYPLRPGEKE  60
CSYYLKTGQC XXXXWHNLAT NSYRVARPPL LPGSYVAGAY GPMLLPGVVS IPNWNPYSGP  120
VSPAPSPGAQ PSVGATSVYG LSQIGSSPPA FAGAYSQLPS SAGPSGGITH EQKFPERIGQ  180
PDCKYYMRTG DCKYGSSCRY NHPPDWAVSK NNCALSSLGL PLRPGVQACS FYMQKGHCKF  240
GRTCKFDHPI SSLKYSPASS YAEMPGTPDR LGFFAATMTF LPTYSFQEVQ GEHIAGSHVD  300
PGRNRAWHSG DSSRGFMF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906884.11e-129zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-106C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D9AJ671e-172A0A4D9AJ67_SALSN; Uncharacterized protein
STRINGEOX949711e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034