PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100174070021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 608aa    MW: 67826 Da    PI: 6.1023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100174070021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-11236259427
                                   ---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                   e C +++++G Ck+G +CkF+H+p
  Ote100174070021|100174070021 236 EDCAYYMKFGSCKFGLNCKFNHPP 259
                                   89********************96 PP
2zf-CCCH222.9e-07282305326
                                   S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                   + +C++++    CkyG  Ck++Hg
  Ote100174070021|100174070021 282 QTECKYYLTAAGCKYGKDCKYSHG 305
                                   568********************8 PP
3zf-CCCH39.78.1e-13328352327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +++C++++rtG CkyG++C+F+H++
  Ote100174070021|100174070021 328 EKECPYYMRTGSCKYGSNCRFHHPE 352
                                   679********************96 PP
4zf-CCCH29.61.2e-09502528127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C+ff++tG Ck+ ++CkF+H++
  Ote100174070021|100174070021 502 PGEPECSFFLKTGDCKFKSNCKFNHPK 528
                                   5799*********************96 PP
5zf-CCCH32.91.1e-10551575226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +++ C +++r+G+CkyG+ Ck+ H+
  Ote100174070021|100174070021 551 DQPVCTHYHRYGICKYGPACKYDHP 575
                                   6899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-5230260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511232260IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4232259IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9236259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573279307IPR000571Zinc finger, CCCH-type
SMARTSM003560.13279306IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-5282305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4285306IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863325353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7326352IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6331351IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4501528IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136501529IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7503528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5506531IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4507528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5547574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037549577IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5549576IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8551575IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MKEVRGSIRN EACIYKNKFR FHFFETLNQW LRVREKGEQF VSPIHIELPV LCGFHSCLEC  60
GSATXXXXXX ESPSSTSEKP PIEKVGLGFL LNDAPPPDPI EPAPAIVEIQ HSEAPPSLMA  120
EVEVETVDEA SAAVADDVED EEAEFRNAIE RELYELTIQQ AEIERAFEIL QSADVGKGDY  180
FGKESESVDX XXXXXXXXXX DGDAGSKSDG MAKLGRFNNQ NNRGKRVNYP MRPDAEDCAY  240
YMKFGSCKFG LNCKFNHPPK RKNQGAKERP NHKEENSDRA GQTECKYYLT AAGCKYGKDC  300
KYSHGSDRNS TALVSEFNFL GLPIRIGEKE CPYYMRTGSC KYGSNCRFHH PEPVAVGADS  360
PSGYRNGGTF PSQFVSSPSA SSWSSPRAFN ETSPFVPVMF PPSQGVPNSN QDWNGYQIST  420
LYACVSFFAK TFRCHLELWI LFMEGETLKH VAQIVGVEAA TYPVSEGLPT PPAFAMNNLP  480
VDMNFAVPHR PDIGLEEYPE RPGEPECSFF LKTGDCKFKS NCKFNHPKSR LNKGKVNSYT  540
LSDKGLPLRP DQPVCTHYHR YGICKYGPAC KYDHPSNFAI LPTPFDQPPF GNSKTMDGAV  600
MLGKGNES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072924.10.0zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A4D9AEW30.0A0A4D9AEW3_SALSN; Uncharacterized protein
STRINGMigut.I00264.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343