PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100126050061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 339aa    MW: 37354.9 Da    PI: 7.3153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100126050061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-113963327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                   + C +++rtG C yG++C+++H++
  Ote100126050061|100126050061 39 LPDCAYYMRTGSCAYGAKCRYNHPR 63
                                  589********************96 PP
2zf-CCCH35.81.4e-1180104327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +++C++++rtGtCk+ ++CkF H++
  Ote100126050061|100126050061  80 EPPCQYYLRTGTCKFASSCKFDHPK 104
                                   79*********************96 PP
3zf-CCCH37.15.5e-12123145426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   ++C+++++tG+Ck+G +CkF H+
  Ote100126050061|100126050061 123 RPCSYYLKTGQCKFGITCKFDHP 145
                                   89********************9 PP
4zf-CCCH43.36e-14253277327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++ C++++rtG CkyG++C+F+H+p
  Ote100126050061|100126050061 253 QPDCKYYMRTGDCKYGSSCRFNHPP 277
                                   789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-53663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6433664IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-93963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-54263IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-577104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84977105IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-880104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-581105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-582102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6119148IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-5119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131119147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5123144IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9123145IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643250278IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11253277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5256275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALYGDQQQL EWGQDSGLEE SMRRLDLWER EVYPERPGLP DCAYYMRTGS CAYGAKCRYN  60
HPRDRISSMG MGEFPERVGE PPCQYYLRTG TCKFASSCKF DHPKNAGGSL INAPLSIYGY  120
PLRPCSYYLK TGQCKFGITC KFDHPLPDGT SVSASARPFY PTAQSLSSPS PEQYDSVTTS  180
YGVARPPLMP GSYAYGPMLL PGVVSVPNWS PYSGAVSPAP SSGAQPSSLY GASSSPAFAG  240
ASQEQRFPER HGQPDCKYYM RTGDCKYGSS CRFNHPPYWA ASKFDCALSS LGLPLRPVRL  300
LSSFPVSIHA CSFHSCYLPV FDDWPDHVFT GYDCANPSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833419.11e-156PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_012833423.11e-156PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-110C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2G9H0Y71e-156A0A2G9H0Y7_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.D00164.1.p1e-155(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034