PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092430131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 372aa    MW: 40983.9 Da    PI: 7.3866
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092430131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.21.6e-083281642
                           TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                                  +YCeCfa+g++C+  C+C +C+N+ e+
  Ote100092430131|100092430131  3 RYCECFASGVYCDG-CNCVNCHNNVEN 28
                                  6*************.********9875 PP
2TCR52.11.3e-1672112141
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                   k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN ee
  Ote100092430131|100092430131  72 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYEE 112
                                   589***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.9161112IPR005172CRC domain
SMARTSM011140.0034328IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-6325IPR005172CRC domain
SMARTSM011141.5E-2072113IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.3E-1375110IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVRYCECFAS GVYCDGCNCV NCHNNVENEG PRREAVEATL ERNPNAFRPK IASSPHGARD  60
NRDEVGEVIT GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNY EESEERQALF  120
HGDHSNNIAY IQQAANAAIT GAIGSSGYGS PPLTKKRKGQ DLFFRSAVKD PVHRLGQLQQ  180
ANHNKVSTPS PSSTSVTVAR PVSASTLGSL KFTYRSLLAD IIQPHDLKEL CSVLVVYSKE  240
AAKMVAEERD ATEKESEDSR KTSLASAIDD KPHSQKHSEA ENCGQSCSDG ADVSKGRPMS  300
PSTLALMCDE HDTMFNSAAS PNRLEVQIDT SSQLPREHRA TTKAYEEQER IILTKFRDCL  360
NRLITLGEIK GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-28412125132Protein lin-54 homolog
5fd3_B5e-28412125132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093606.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-153TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A4D8YN360.0A0A4D8YN36_SALSN; Uncharacterized protein
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455