PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100069700141
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 640aa    MW: 70660 Da    PI: 7.9847
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100069700141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.19.4e-15115154242
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                   ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  Ote100069700141|100069700141 115 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCHNNVEN 154
                                   89**************************.********9875 PP
2TCR51.12.7e-16198237140
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Ote100069700141|100069700141 198 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 237
                                   589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17114154IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.193115238IPR005172CRC domain
PfamPF036381.2E-11116151IPR005172CRC domain
SMARTSM011146.2E-20198239IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-12201236IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEQREGHDFP PKNPLPQQTE ATTADVDFPA RKLVRQLDFT GGASTTEQRQ QVKLEQQTPA  60
SLPHLVKPPH MLFMSMQQPP VPPPHPSIRP PLKPESPRSR PRQNVNEVKD GTPKKQKQCN  120
CKHSRCLKLY CECFASGVYC DGCNCVNCHN NVENEGPRRE AVEATLERNP NAFRPKIASS  180
PHGARDNRED VGEIITGKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNYEGSE  240
ERQALFHGDH ANNIAFIQQA ANAAITGAIG SSGYGSPPLT KKRKSQDLFF GSTVKDPVHR  300
LGQLQQLRPP VFTPLIPICS IKKWIVLNEH LLVHFMLGKL IQAGHNKDPV PPPSSSSTVA  360
RPVNTSNLAS LKFTYRSLLA DIIQPQDLKE LCSVLVVYSR EAAKMLAEEQ NAAEKQAQDS  420
PKTSLASTIQ EESQSQKHPQ AEKAQANHLP SEDQTEKVTP EESSSAGADI PKGRPMSPGT  480
LALMCDEQDT MFTAAASPNR LEVQNNASSQ LPLEHRAAEV HEEQERIILT KFRDCLNRLI  540
TLGEIKGKFS SFFLYLFVIP IVQVFHPSSV TPCRDQIFFI GTADARNQHH ASNGVANIAV  600
PWQASAVATQ SSAAANNAPF VRISAPAENG DARTNYEREL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-321072472132Protein lin-54 homolog
5fd3_B9e-321072472132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093606.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-169TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A4D8YN360.0A0A4D8YN36_SALSN; Uncharacterized protein
STRINGcassava4.1_023118m0.0(Manihot esculenta)
STRINGXP_009608929.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455