PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100032390011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 292aa MW: 32810.5 Da PI: 6.3409

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100032390011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108	4.5e-34	154	211	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp+vv++tYeg+Hnh+ Ote100032390011\|100032390011 154 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPSVVITTYEGQHNHH 211 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-35	140	213	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-30	145	213	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	148	213	IPR003657	WRKY domain
SMART	SM00774	7.7E-40	153	212	IPR003657	WRKY domain
Pfam	PF03106	9.5E-27	154	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSEDFREFYY HHPFHDDRCS GATATFPYSG SHSSGDAHLQ MFDPSSYVSF TDFLHGSTDH 60 NSLTAALMKE EKPAAEAGET PATPNSSISS SSTEAAAAEE DSNKVKKEKE TAIDCGEDHD 120 TSKKEGKGXX XXXXXXXXXP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT 180 TQKCPVKKRV ERSFQDPSVV ITTYEGQHNH HVPATLRGNM AGLFGHSMLT PPLSLEGQSL 240 FPQELLLQMP HLYSYDGGSS SNLYHQQQQL QQFADYGLLQ DIIPSTFPKK EP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-30	143	214	7	78	Probable WRKY transcription factor 4
2lex_A	7e-30	143	214	7	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085274.1	1e-130	probable WRKY transcription factor 71
TrEMBL	A0A0D5YAF0	1e-129	A0A0D5YAF0_SALMI; WRKY protein
STRING	Migut.H01387.1.p	1e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75