PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100005090021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 195aa    MW: 22509.2 Da    PI: 5.3672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100005090021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-182267148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Ote100005090021|100005090021 22 RGNFTKEEEEAIINLHHMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 67
                                  89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.135116IPR017877Myb-like domain
SuperFamilySSF466891.09E-22375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-12327IPR009057Homeodomain-like
PROSITE profilePS5129426.5221771IPR017930Myb domain
SMARTSM007171.0E-152169IPR001005SANT/Myb domain
PfamPF002491.4E-162267IPR001005SANT/Myb domain
CDDcd001677.94E-122467No hitNo description
Gene3DG3DSA:1.10.10.601.9E-232872IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
LLRCGKSCRL RWINYLKPDI KRGNFTKEEE EAIINLHHML GNRWSAIAAR LPGRTDNEIK  60
NVWHTHLKKK LKNNESSQDS KGHSIMSINS KCDNKDNFDT IVTTSPQRCS SEMSSLTDSS  120
TEKVAVKKEE VDYSSQYFPM MESFWSGDVT EMNREVDANV PLMENVDDSK VDDSSMDFWY  180
NLFIRAGDMP DLPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091315.11e-93myb-related protein Myb4
SwissprotQ6K1S67e-48MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A059PSM15e-97A0A059PSM1_SALMI; MYB-related transcription factor
STRINGMigut.G00519.1.p1e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]