PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.C_Chr_02.0001000347

Common Name

Ot02g07750, OT_ostta02g05530

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 554aa MW: 60848.9 Da PI: 6.7001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.C_Chr_02.0001000347	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	41	64	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp+C ++F++ + L+ H + H fgenesh1_pg.C_Chr_02.0001000347 41 HQCPHCERTFKQLDRLRMHVARqH 64 79*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.912	41	65	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.007	41	64	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	43	64	IPR007087	Zinc finger, C2H2
SuperFamily	SSF54495	1.51E-8	438	536	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
Gene3D	G3DSA:3.10.110.10	6.4E-7	438	537	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
Pfam	PF05773	5.0E-7	440	536	IPR006575	RWD domain
PROSITE profile	PS50908	9.604	444	544	IPR006575	RWD domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MAPSNAQKKA LAKAKRGIVS TGAMSSKSGF DQAALQQNRD HQCPHCERTF KQLDRLRMHV 60 ARQHADVGGE ETSSAATVQG GLDGVKKGKA ALIIAEREKL KERARLERES DPTAKPNAPT 120 PFSRMSCKLP SVILREFVQK QKEFKSPRFR AKEESAENGG GWTCKVVLAD KHKPDKDKVF 180 FWKEKCETKE EAEHRVAVVA LAKIANSLPL QRLLPTEYKS TFVECERLEA KRLEDAKNHA 240 AREEQRIARM KSASKREVVQ VLTMSEEKRT LVETLLKEDY VMVSSADDDG ADEDEEGGVN 300 ELCEKLESLG FVREDALAAS KATKSTLESA LDPAISWLCV HVPESRLPAL YAPKLLNDGG 360 VVLLSKPTAS TSSASADARP TNPTTAWLWE RGYDQKSCED AVSEHSGRED ALAHLFGRVL 420 AKVSTEHASW PKGDPNFNEE EWNEELMAIE AICGEEKVSR IQGGGVRVNV DTEVGIGGTL 480 EVYLPKGGGY PCVEPPIIAY HAHGESREAF MRATRELARI AVENCGAPCV YTLIDAAPGL 540 VKFETRGDVK GASK

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MAPSNAQKKA LAKAKRGIVS TGAMSSKSGF DQAALQQNRD HQCPHCERTF KQLDRLRMHV  60
ARQHADVGGE ETSSAATVQG GLDGVKKGKA ALIIAEREKL KERARLERES DPTAKPNAPT  120
PFSRMSCKLP SVILREFVQK QKEFKSPRFR AKEESAENGG GWTCKVVLAD KHKPDKDKVF  180
FWKEKCETKE EAEHRVAVVA LAKIANSLPL QRLLPTEYKS TFVECERLEA KRLEDAKNHA  240
AREEQRIARM KSASKREVVQ VLTMSEEKRT LVETLLKEDY VMVSSADDDG ADEDEEGGVN  300
ELCEKLESLG FVREDALAAS KATKSTLESA LDPAISWLCV HVPESRLPAL YAPKLLNDGG  360
VVLLSKPTAS TSSASADARP TNPTTAWLWE RGYDQKSCED AVSEHSGRED ALAHLFGRVL  420
AKVSTEHASW PKGDPNFNEE EWNEELMAIE AICGEEKVSR IQGGGVRVNV DTEVGIGGTL  480
EVYLPKGGGY PCVEPPIIAY HAHGESREAF MRATRELARI AVENCGAPCV YTLIDAAPGL  540
VKFETRGDVK GASK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003075376.1	0.0	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
TrEMBL	Q01DF3	0.0	Q01DF3_OSTTA; DNA/RNA helicase, DEAD/DEAH box type, N-terminal
STRING	Q01DF3	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13231	2	2

Link Out ? help Back to Top
Entrez Gene	9836758

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]