PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

1000010317

Common Name

OT_ostta10g03080

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 413aa MW: 46397.9 Da PI: 7.1703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
1000010317	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	5	24	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cg +F ++ L rH+r 1000010317 5 SCSACGATFASRNALFRHLR 24 7*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.871	4	34	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSEISCSACG ATFASRNALF RHLRADDASC GDVNDVASTS SASTQVEGAS RRASKRTTKE 60 GKGHDERRGP RAQRTDEDAL ERELWIGGLR GKFRSFKGFR DAIWRAMPRE GCEGIPVPQA 120 RVFKARGYKE KGEWVGYGFA ACRDPGEAKA LLVMHGTEIV DEDSGAIMVL KVLPATRRHA 180 GDKAKTPTKS RELKAGEHPN ERDIFMAWTS KTLERRALDR GITSEELVTD ALEREHAYVA 240 LRGVEVDRTA TERLRDELFD TKWPAQSQRR SVKSDNYIVL KRECSPSDPY ESLKLACEDL 300 MRAVDPSFPY DSLAITKNFI SSAHLDKEDQ SFQYAMAFGD FTGGGELCVE SSDGLTRYAI 360 DTRERLARFD GRCVHWVRGY EGERFSVVWY VNRRTNFTEP RFDVDLSFVA QD*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSEISCSACG ATFASRNALF RHLRADDASC GDVNDVASTS SASTQVEGAS RRASKRTTKE  60
GKGHDERRGP RAQRTDEDAL ERELWIGGLR GKFRSFKGFR DAIWRAMPRE GCEGIPVPQA  120
RVFKARGYKE KGEWVGYGFA ACRDPGEAKA LLVMHGTEIV DEDSGAIMVL KVLPATRRHA  180
GDKAKTPTKS RELKAGEHPN ERDIFMAWTS KTLERRALDR GITSEELVTD ALEREHAYVA  240
LRGVEVDRTA TERLRDELFD TKWPAQSQRR SVKSDNYIVL KRECSPSDPY ESLKLACEDL  300
MRAVDPSFPY DSLAITKNFI SSAHLDKEDQ SFQYAMAFGD FTGGGELCVE SSDGLTRYAI  360
DTRERLARFD GRCVHWVRGY EGERFSVVWY VNRRTNFTEP RFDVDLSFVA QD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022839850.1	0.0	Zinc finger, C2H2
TrEMBL	A0A1Y5I854	0.0	A0A1Y5I854_OSTTA; Uncharacterized protein
STRING	A0A090M9R7	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6432	3	3

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]