PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g06640.1

Common Name

LOC4351583, Os12g0163500, OsJ_35324, OSNPB_120163500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 433aa MW: 48773.1 Da PI: 6.5865

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g06640.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	8.8e-26	108	203	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 +Wt+++v++Li+a+++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++ LOC_Os12g06640.1 108 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALL 200 7*******************9877778889999********************************************549999999998 PP trihelix 83 dql 85 d + LOC_Os12g06640.1 201 DCM 203 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.8E-20	106	230	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020039	anatomy	leaf lamina

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM HVNQSTDSDH LSEFQFGELG 60 KVDHHHHHHH RQHAKNGMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA 120 VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR 180 LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP 240 EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM 300 HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLATQSAD 360 LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE 420 LELKQKGSGN HA*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM HVNQSTDSDH LSEFQFGELG  60
KVDHHHHHHH RQHAKNGMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA  120
VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM  300
HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLATQSAD  360
LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE  420
LELKQKGSGN HA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.10361	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32988331	0.0
Expression Atlas	Q2QXB1	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g06640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g06640

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103122	0.0	AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBank	AL713936	0.0	AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619923.1	0.0	trihelix transcription factor GT-3a
TrEMBL	A0A0E0RE65	0.0	A0A0E0RE65_ORYRU; Uncharacterized protein
TrEMBL	Q2QXB1	0.0	Q2QXB1_ORYSJ; Expressed protein
STRING	ORUFI12G04460.1	0.0	(Oryza rufipogon)
STRING	OS12T0163500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-101	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	LOC_Os12g06640.1
Entrez Gene	4351583

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]