PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g06410.3

Common Name

LOC4349866, Os11g0163500, OSNPB_110163500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 436aa MW: 49608.4 Da PI: 6.417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g06410.3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.1e-27	114	210	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++ LOC_Os11g06410.3 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLL 206 7*******************8744455667777******************************************55****** PP trihelix 83 dqle 86 d+++ LOC_Os11g06410.3 207 DHMD 210 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-20	112	235	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm
PO:0007042	developmental stage	whole plant fruit formation stage
PO:0007633	developmental stage	endosperm development stage

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI 60 SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV 120 KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL 180 NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN 240 RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEENE EEHRAVDTNI 300 RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK 360 AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRFELDLRHK 420 ELELEIKIKG NANHP*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEENE EEHRAVDTNI  300
RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRFELDLRHK  420
ELELEIKIKG NANHP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.87768	0.0	callus\| flower\| leaf\| panicle\| seed\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32986363	0.0
Expression Atlas	Q53PP7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g06410.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g06410

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120533	0.0	AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBank	AK101154	0.0	AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615140.1	0.0	uncharacterized protein LOC4349866 isoform X1
Refseq	XP_015615141.1	0.0	uncharacterized protein LOC4349866 isoform X1
TrEMBL	Q53PP7	0.0	Q53PP7_ORYSJ; Expressed protein
STRING	OS11T0163500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-93	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	LOC_Os11g06410.3
Entrez Gene	4349866

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]