PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g06410.1

Common Name

LOC4349866, Os11g0163500, OSNPB_110163500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 484aa MW: 55062.9 Da PI: 6.7117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g06410.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.6	6.1e-27	162	258	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++ LOC_Os11g06410.1 162 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLL 254 7*******************8744455667777******************************************55****** PP trihelix 83 dqle 86 d+++ LOC_Os11g06410.1 255 DHMD 258 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-20	160	283	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm
PO:0007042	developmental stage	whole plant fruit formation stage
PO:0007633	developmental stage	endosperm development stage

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MSILLWLSHV LLKLHYLRLY SCASSCTPVS ILYGTNKKLK CLGDRFGEME GSNPPGNMTQ 60 GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ IPGNFTIPMD RVTEPDNISD GVQLGQHGKI 120 AHHHHHHRHH SKNHGSDEEE HDMNEDAADG KDKKGSPWHR MKWTDSMVKL LITAVSYTGE 180 DPGADLGGGR RNYSMMQKKG KWKAISKVMG ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG 240 RGTACNVVEN HSLLDHMDIS EKMKEDARKI LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ 300 SLQLALRCKE DNDFMRHASG DAELDDDQSE DSDYEENEEE HRAVDTNIRG PSMHKRMWHV 360 VDHGDVGFVT SCSNDGSGRS DPYDVLDINK PFPDGCDLAL VQKDLALKAA EIQKHRLQIE 420 TKAVQLAKQR LKWEMFRKNK DLELEKLALE NEQMMLQNKR FELDLRHKEL ELEIKIKGNA 480 NHP*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MSILLWLSHV LLKLHYLRLY SCASSCTPVS ILYGTNKKLK CLGDRFGEME GSNPPGNMTQ  60
GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ IPGNFTIPMD RVTEPDNISD GVQLGQHGKI  120
AHHHHHHRHH SKNHGSDEEE HDMNEDAADG KDKKGSPWHR MKWTDSMVKL LITAVSYTGE  180
DPGADLGGGR RNYSMMQKKG KWKAISKVMG ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG  240
RGTACNVVEN HSLLDHMDIS EKMKEDARKI LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ  300
SLQLALRCKE DNDFMRHASG DAELDDDQSE DSDYEENEEE HRAVDTNIRG PSMHKRMWHV  360
VDHGDVGFVT SCSNDGSGRS DPYDVLDINK PFPDGCDLAL VQKDLALKAA EIQKHRLQIE  420
TKAVQLAKQR LKWEMFRKNK DLELEKLALE NEQMMLQNKR FELDLRHKEL ELEIKIKGNA  480
NHP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.87768	0.0	callus\| flower\| leaf\| panicle\| seed\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32986363	0.0
Expression Atlas	Q53PP7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g06410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g06410

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101154	0.0	AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615140.1	0.0	uncharacterized protein LOC4349866 isoform X1
Refseq	XP_015615141.1	0.0	uncharacterized protein LOC4349866 isoform X1
TrEMBL	Q53PP7	0.0	Q53PP7_ORYSJ; Expressed protein
STRING	OS11T0163500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-92	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	LOC_Os11g06410.1
Entrez Gene	4349866

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]