PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g41460.1
Common NameLOC4349408, Os10g0564200, OSJNBa0027P10.21, OSNPB_100564200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 337aa    MW: 35636 Da    PI: 9.1903
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g41460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.6e-2352141186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+++   ++p+f  l+
  LOC_Os10g41460.1  52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 141
                       8*************************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2151142No hitNo description
PROSITE profilePS500905.99353115IPR017877Myb-like domain
SMARTSM005951.1E-560144IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAVSSGG AGGSGRRLPP PCWTHEETLA  60
LIEAYRDRWE GLRKGNLRAS DWDDVAGAVT ARCGRFPTAT HKSGVQCRHK IEKLRKRYRA  120
ERARAAGRSK GPKWPFFPLL HDLAGGGAPD PSPNPIIKIK SKGPAAAAAS PSPASPSPVS  180
SPSSEEDEEE EAAADAGRSR SLHGLISNGG SGSGLRFTIP KASRSKPVAQ REQPTAIKVE  240
KSEEDAEAEA MAEVASALRA VGDKFLRMEE RRLEISLQIE KERMESEMKR TQTLLDAQQL  300
FVEAFLGKQQ HHHHHHKKAK VISAAAAAAT AAMDED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.226660.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329825100.0
Expression AtlasQ7XC32-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g41460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g41460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612771.10.0trihelix transcription factor ASIL1
TrEMBLA2ZAB20.0A2ZAB2_ORYSI; Uncharacterized protein
TrEMBLQ7XC320.0Q7XC32_ORYSJ; Expressed protein
STRINGOS10T0564200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-17Trihelix family protein