PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g01470.1
Common NameHOX15, LOC4347946, Os10g0103700, OsJ_029257, OSJNBa0071K19.5, OSJNBa0096E22.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27178.6 Da    PI: 8.057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g01470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-1893147256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LOC_Os10g01470.1  93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 147
                       788899***********************************************98 PP
2HD-ZIP_I/II125.82e-4093181190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  LOC_Os10g01470.1  93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 181
                       69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-1880150IPR009057Homeodomain-like
PROSITE profilePS5007117.00689149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1791152IPR009057Homeodomain-like
SMARTSM003892.1E-1591153IPR001356Homeobox domain
PfamPF000462.3E-1593147IPR001356Homeobox domain
CDDcd000864.28E-1593150No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PfamPF021831.5E-10149182IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.0E-21149192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAQDDEDVGL ALGLSLGSGG HRRQRESRDE APSSAAASLL TLRLPAESGG QPQVVVKREV  60
VRAEEEEYEY EYERALYSSS AAAADDDEGC NSRKKLRLSK EQSALLEDRF KEHSTLNPKQ  120
KVALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCETLTEENR RLHRELQQLR  180
ALTHSTAAGF FMATTLPVPA ATLSICPSCE RLATAAAAGA SPTAAADRTN KPTAPHLFSP  240
FAKSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197SRKKLRL
2141149RRARTKLKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7G737
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g01470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693240.0AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBankAC0994000.0AC099400.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0096E22, complete sequence.
GenBankAC1451270.0AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612921.11e-180homeobox-leucine zipper protein HOX15
SwissprotQ7G7370.0HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A0E0QVI51e-179A0A0E0QVI5_ORYRU; Uncharacterized protein
STRINGORUFI10G00170.11e-179(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-59HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]