PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g38570.1
Common NameLOC4347833, OJ1065_E04.5, Os09g0558200, OSNPB_090558200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 337aa    MW: 36335.9 Da    PI: 7.0543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g38570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.94.5e-1225127186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkr...tsess 76 
                       +W+++ +  L+ea++ ++   +r+klk  +W +++  +                    ++p+qCk+k+e+++kry+++ + + +    ++++ 
  LOC_Os09g38570.1  25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAGAG 117
                       5*******************************9999999999******99977778899******************9988877633246667 PP

          trihelix  77 stcpyfdqle 86 
                        ++++f +++
  LOC_Os09g38570.1 118 PSWRFFARMD 127
                       8999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-1423128No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDALPDAADA AQLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH  60
EVSAHCAMEN AAATGKPGSS TAKTPNQCKN KIESMKKRYR AESAAAARAG PAAAGAGPSW  120
RFFARMDGLL KGPAGSGQPQ AELSNSIDLR APPPAKVEVD VDADFVSQLA DAGPGALSEL  180
VSAYANGSIQ EKLDKVENSG HVEGRAAESD VNVSSPRIKE ANEDAEEVDK VWDMSKKRKN  240
TEFDIAKSIE LLASSFLKIE RARMDLYRET ERMRVEAEIK KGEMELKRTE IMAKTHLQIA  300
KLFAKRLKEC SSKTGGSSSV TAEVDNHAKK GENGSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1030160.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329888820.0
Expression AtlasQ653S1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g38570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g38570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036730.0AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612002.10.0trihelix transcription factor ASIL1
TrEMBLA0A0E0QV050.0A0A0E0QV05_ORYRU; Uncharacterized protein
TrEMBLQ653S10.0Q653S1_ORYSJ; Os09g0558200 protein
STRINGORUFI09G20970.10.0(Oryza rufipogon)
STRINGOS09T0558200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-48sequence-specific DNA binding transcription factors