PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g37810.1
Common NameLOC4345874, Os08g0484700, OSNPB_080484700, P0419H09.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 316aa    MW: 35062.4 Da    PI: 7.708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g37810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.9e-2029113286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W + e+++L++a++e+++rlrrg+lk+++Weev++ +      +   ++++ +qC++k+e+l+kry+ + ++         s +pyf+++e
  LOC_Os08g37810.1  29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 113
                       *************************************999987777889*****************988776664......68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1827115No hitNo description
SMARTSM005954.0E-536120IPR006578MADF domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAQEAASAAA GEEGALPQRR RKSAPGQPWA HMETMHLLDA YEERWTRLRR GQLKAQQWEE  60
VAADVAARCA ASGAALRKTG TQCRHKLEKL RKRYRIEGAR PVTSLWPYFR RMERLERGPL  120
PVSSAFPPPP PAASPPAAAS DDDDDDEEDD EEEEEVEEPI PRNNTRSING ILRDSGGGGG  180
GFSGFAPRPP PQQPPPSFAM LSTAPPRKRV PYEAFQAKVA MADKVKEEEP PPVATRPGGG  240
TNEQLSAVLR DFGQGIMRLE RRRMEMQWEI DRGWKETEAR HNRMLLDAQR HLHEALAATP  300
PPLKKARREH GGDGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722QRRRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.60160.0callus| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160138840.0
Expression AtlasQ6YTS9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g37810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g37810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059180.0AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648379.10.0trihelix transcription factor ASIL2
TrEMBLA0A0E0QKG00.0A0A0E0QKG0_ORYRU; Uncharacterized protein
TrEMBLQ6YTS90.0Q6YTS9_ORYSJ; Os08g0484700 protein
STRINGORUFI08G20750.10.0(Oryza rufipogon)
STRINGOS08T0484700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Representative plantOGRP1302445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-19Trihelix family protein