PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g37610.1
Common NameLOC4343608, OJ1720_F04.105, Os07g0563300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 956aa    MW: 105720 Da    PI: 8.2512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g37610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.1e-19453552198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  LOC_Os07g37610.1 453 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 543
                       89**************************777788889***************9989999999***9.********************987.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  LOC_Os07g37610.1 544 GKLVMGFRK 552
                       777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.102.3E-29449554IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19450552IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-22451552No hitNo description
SMARTSM010195.7E-21453553IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251453554IPR003340B3 DNA binding domain
PfamPF023628.3E-16453552IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17708758IPR011124Zinc finger, CW-type
PfamPF074965.0E-11713755IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT  60
PQHQQQQQGP PGHAPPQQRP RICFNAHCKD PKSDGPRRRG WRLRNGDFAE LCDRCYHSFE  120
HGGFCETFHL EVAGWRNCES CGKRLHCGCI VSVHAFVHLD AGGVECVMCA RKSHAAMAPS  180
QIWSSSMHMA QNVADRKDNF VKSWRPPAGQ FSSQWRQNNM WSMSTMQSDL QQRLAFEFDR  240
PSGSEKLLPG RTFIHAHEKK FDDMHDRSTT PAGMNQIMRE RYANGHTQHT TLDPTYAYTL  300
YHREGTNPNL HDHSHHAGEN DHLTARKGVT SDPCSSVSTT FKLDSHHPSI LKDDPSAVPA  360
GLSSNFSSAN GPKDHIRIGP TQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK  420
ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP  480
AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI  540
DPEGKLVMGF RKATNLSAEQ DQPTKPANGV LPPPEANNKV VVPDSSPNAA VPRPIKVNTE  600
SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPLPVKRKA TSVGPKIKRF HMDSEESMEL  660
KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC  720
SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LGEMIPIKPG AAKKTKGKVD  780
TDNIDVSDGL DTLANLAILG EGESLPSQPT TRHPRHRPGC SCIVCIQPPS GKGPKHKQTC  840
TCNVCMTVRR RFRTLMMRRE KRQQSEKDSG VPRKREPGQS SEPVPQSGSG AHPTSTSSPH  900
QRADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ SPKSDATRLL RDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-644315551125B3 domain-containing transcription repressor VAL1
5yzz_C5e-644315551125B3 domain-containing transcription repressor VAL1
5z00_C5e-644315551125B3 domain-containing transcription repressor VAL1
5z00_G5e-644315551125B3 domain-containing transcription repressor VAL1
5z00_K5e-644315551125B3 domain-containing transcription repressor VAL1
5z00_M5e-644315551125B3 domain-containing transcription repressor VAL1
6j9a_A4e-644315552126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.460190.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0D5G4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g37610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g37610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLB9FXX70.0B9FXX7_ORYSJ; Uncharacterized protein
STRINGORGLA07G0151800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-142HSI2-like 1