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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g05720.1 | ||||||||
Common Name | LOC4342416, Os07g0152000, OsJ_23121, OSNPB_070152000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 446aa MW: 47256.3 Da PI: 9.4979 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.8 | 5.6e-40 | 59 | 198 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.........eaesss 79 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++ + ++as++ LOC_Os07g05720.1 59 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfpT-NPASSAavaaaaappL----- 145 689*************************************************************7776642.2222222221122222..... PP TCP 80 ssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132 + ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++ + LOC_Os07g05720.1 146 --------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 198 ........0222223356777779999**************************99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-40 | 60 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.189 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.408 | 178 | 195 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQQHPAS RIYRVSRASG 60 GKDRHSKVYT AKGIRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK AAAAAIDKLP 120 SLDTASFPTN PASSAAVAAA AAPPLPHAER EQQQQLTKSG CSSTSETSKG SVLSLSRSES 180 RVKARERARE RSSAAAAAAS KDAGDDAATP TAPTAAPASS QAASFTELLT GMAAANASPA 240 DHKQQQAWQP MTVAAATADY IGFAAAAAPH TQPRKSAAGH HSAMPHTFAS PAPHLANITP 300 IAMAPAQHFT LTPAAAEHHA EMTHYSFDHF MPVHAAAAAA AAASTPAGGD YNLNFSMSSG 360 LVGVHSRGTL QSNSQSHLSS HHHHHHQQQQ QQQQLQRLSA PLDAPNIPFL FSPAAAPTAA 420 DTQFAAALQL WDGFRHADIK EKGKH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-31 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-31 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58584 | 0.0 | flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297606748 | 0.0 | ||||
Expression Atlas | Q0D8K4 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g05720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g05720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003704 | 0.0 | AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10. | |||
GenBank | AP006163 | 0.0 | AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644886.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A2YI86 | 0.0 | A2YI86_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q0D8K4 | 0.0 | Q0D8K4_ORYSJ; Os07g0152000 protein | ||||
STRING | OS07T0152000-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g05720.1 |
Entrez Gene | 4342416 |