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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g05010.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 419aa MW: 44503.5 Da PI: 4.5754 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.5 | 5e-18 | 233 | 279 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq LOC_Os07g05010.3 233 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 279 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.67E-18 | 225 | 283 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-21 | 227 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.768 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-22 | 233 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-15 | 233 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-18 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MDAGATARSS SSSAMMMNQK KPLLSDGELV ELLWQDGGVV AHAQTRHRSS DVLARSGVTG 60 EEETASAWFA DGGGGGGGDD DALGLGMGRD IYSQLWHSFA NVDGHAAGAL ALATPTPTPR 120 AAARSDDVSS RLDEADLSIC GSNAVVAPAL PADDDDDIDA AAPREEEEEE EEGPGAARAA 180 GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA AEVHNLSERR 240 RRDRINEKLR ALQELVPHCN KTDKASILDE AIEYLKSLQM QVQIMWMTTG IVPMMFPGTH 300 QLMPPMGMGL NTACMPGAQA QGLNQMQRTT YYMNNSLPNQ MPQIPSPAMN APSVPDDMQN 360 DNRIRGPRNP FLHCNDTLTA TAQVPGLFTY GSQIAEQNEI QELLSGAVIP SSSDGTIK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 241 | KRRTRAAEVHNLSERRRR |
2 | 237 | 242 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.44516 | 0.0 | leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32970263 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g05010.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g05010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN400276 | 0.0 | JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648043.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Refseq | XP_015648044.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Refseq | XP_015648045.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Swissprot | Q10CH5 | 1e-92 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | B9FVG4 | 0.0 | B9FVG4_ORYSJ; Uncharacterized protein | ||||
STRING | OS07T0143200-00 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-28 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g05010.3 |
Publications ? help Back to Top | |||
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