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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g04700.5 | ||||||||
Common Name | LOC4342365, OJ1417_E01.122, Os07g0139500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 835aa MW: 92424.6 Da PI: 10.1846 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 156 | 248 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++ LOC_Os07g04700.5 156 KQPWSDVEKEKLAKGIKQQYQEalilnsinkgsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 248 79****************99999***************************************************99888************97 PP | |||||||
2 | Myb_DNA-binding | 29.7 | 1.5e-09 | 256 | 300 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q LOC_Os07g04700.5 256 NAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 300 68**************************************99995 PP | |||||||
3 | Myb_DNA-binding | 43.6 | 6.7e-14 | 310 | 353 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l LOC_Os07g04700.5 310 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 353 6*****************99.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 51.3 | 2.7e-16 | 361 | 406 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l LOC_Os07g04700.5 361 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 406 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 31.7 | 3.6e-10 | 413 | 457 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+ LOC_Os07g04700.5 413 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 457 68*****************88.****945777.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.377 | 151 | 249 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 152 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-6 | 155 | 251 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00116 | 220 | 248 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 221 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 236 | 269 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.502 | 250 | 302 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0017 | 254 | 304 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.04E-21 | 255 | 349 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-6 | 256 | 300 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-4 | 257 | 302 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 270 | 314 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.432 | 303 | 353 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 307 | 355 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 310 | 352 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-9 | 311 | 353 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 315 | 356 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.971 | 354 | 410 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 358 | 406 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.93E-26 | 359 | 454 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 359 | 408 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 361 | 406 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-11 | 362 | 406 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-15 | 407 | 462 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-8 | 411 | 460 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-8 | 413 | 457 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.267 | 413 | 462 | IPR017930 | Myb domain |
CDD | cd00167 | 7.30E-9 | 414 | 457 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MNTKTEASKE GSGNIFGNEL DEEFDAEKHN KEATTRTGFP KAALLLVDAL KKNRACQKFI 60 RRKMITIEAK IEENKDLRDR VKCLLDYQLS CRKAFGKILC QKEDPRVRLI SSRKPCAQST 120 KNKDKKTPAL FLGPADNPHV SKYKMVLKQL PMSLQKQPWS DVEKEKLAKG IKQQYQEALI 180 LNSINKGSST GDFSAVDMAY ALTNTAGNFE VTPESLRSVL PLINWDKIAA MYLPGRSGAE 240 CESRWLNFDD PLISHNAWTA REEKRLILTV QQQGMNNWIN IAVTLGTHRT PFQCLVRYQR 300 SLNHCILNKD WAEEEDLQLQ AAVNTFGTNW QLVSASMDGR TGNQCSNRWR KTLNPERSRV 360 GRWSLDEDKR LMVAVKLFGS GSWNKIAQFI PGRTQSQCNE RWRNVLDPDI DLGEWRPEED 420 SILLASVDEF GPCWSKIAGA KIPHRTDNMC LRRWRKLCQD KLPSVKAAQQ IKKSILQCNF 480 VDRETERPAI GPSDLMPLVR SKVDGSDENT VSAKVRKPRK RSRIPCEDNV LPGDTSNSSP 540 SMNLPLSESI DAEAAVNTTT ANSKKKPSRS RSKKQTDENL AVCDVNNSSN CSSGARKRKR 600 SITDKNQVVQ KKMKGSISGD NEAVVETVGT ISADNEVATK RKTGSTSVGE EGTTKKTTRG 660 SLSGKGEVNK RMRGSISGVQ KGATKQRMRG SVSTDNHGAV MKSKRAPSRK SAEENSKADS 720 MANAAFGSDL PTVASEDRDA NNGNVKNGRL KSMPRPKQIN MTEGSADKFS TSTRLADCMS 780 FGRINGSSRV ARHLCVSVKP LSNMIQSNGP SDVSAKDPTS AETDPTSVEN SNTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-25 | 227 | 454 | 8 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-25 | 227 | 454 | 8 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49202 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975470 | 0.0 | ||||
Expression Atlas | Q7XIP8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g04700.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g04700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883083.1 | 0.0 | myb-like protein L | ||||
TrEMBL | Q7XIP8 | 0.0 | Q7XIP8_ORYSJ; Basal transcription factor SNAPc large chain SNAP190-like protein | ||||
STRING | ORUFI07G02320.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-145 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g04700.5 |
Entrez Gene | 4342365 |