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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g51260.1 | ||||||||
Common Name | LOC4342135, Os06g0728700, OsJ_22733, OSJNBa0069C14.1, OSNPB_060728700, P0017G10.36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 452aa MW: 49486.6 Da PI: 4.9832 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ LOC_Os06g51260.1 65 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 109 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.48E-16 | 59 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.585 | 60 | 114 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.3E-16 | 63 | 112 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 65 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-14 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-11 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MASMPQLEEK DSSDLAINKG PSLDLVKSPL MMNDASATVT AMQPNEGMEE FPVKVRKPYT 60 ITKQREKWTE EEHDKFLEAL KLYGRSWRQI QEHIGTKTAV QIRSHAQKFF SKVVREPGSN 120 NAIEIPPPRP KRKPLHPYPR KCANSGSDAN PATAQLKLAP GSSSSGSDQE NGSPISVLSA 180 MQSDAFGSSV SNPSTRCTSP ASSDDGNNIP TFTSGEDNNV PCEPTVIDPS QSHKEIDQDR 240 KDVNNMSEED SSEEEVQETS LKLFGRTVVI PDPRKRSSSD PKHESEEQIS QPSNEEMLQA 300 SSSVGEIPAA YCAPNGWFMS YNSFPFQFGE SAADARIPPL HVWWPYYGFA PISHPRGLST 360 VMQQTEGSDE SDGVKSHSSE SSSDSGENVQ MTAPQSSRIV ESLGAIYVRD SGSSFELKPS 420 ANSAFVRVKP SNSGDEEVIR GFVPYKRCKF Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18955 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 194396096 | 0.0 | ||||
Expression Atlas | Q5Z5B9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g51260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g51260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119632 | 0.0 | AK119632.1 Oryza sativa Japonica Group cDNA clone:002-130-E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644385.1 | 0.0 | protein REVEILLE 1 isoform X1 | ||||
TrEMBL | A0A0E0Q2W8 | 0.0 | A0A0E0Q2W8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5Z5B9 | 0.0 | Q5Z5B9_ORYSJ; Os06g0728700 protein | ||||
STRING | ORUFI06G30080.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0728700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 2e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g51260.1 |
Entrez Gene | 4342135 |