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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g49550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 742aa MW: 83656.6 Da PI: 7.8689 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.7 | 3.8e-23 | 102 | 198 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ +H LOC_Os06g49550.1 102 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHH 194 6******************************************99999999999999999******************99************* PP FAR1 86 nHel 89 H++ LOC_Os06g49550.1 195 VHPV 198 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-21 | 102 | 198 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-26 | 321 | 411 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.299 | 600 | 636 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.2E-6 | 610 | 634 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-4 | 611 | 638 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MGPPCEAQSL LSLFARFLLL PLERIPFPFR STPTPALLHS RRRELRGVGG MEGHRRGEAD 60 DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR AGFAVRTDKS 120 RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC MAMCEVTKKE 180 PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA TEPSDEPTGA 240 PAAVGNGAPN GGPSFCNRLV RANPAGVRAE VQDLLDYLRK MQAESPGFFY AMQVDSGNCV 300 TNVFWADAKA RMAYKSFGDA VTFDTTYRKT KYMMPFAVFR GINHHLQGII FGCCLLMDET 360 KSSYTWLFDT WLAAMGGRQP DLLVTDQCKA MEAGIARVLP NTRHRFCQRN ILSLCKQKLS 420 AVYIQHINLK ADLRECVFEA ETIEEFQARW DYVIHKYNLE ENTWLQSLYD TRQQWAWVYQ 480 KGSFFPELLK SQRSERLNKF FKTHFNMKTP LLVLISRFDQ VMALSFEKEA QANFVTAYSK 540 PTLKTPSVIE RQAAAIYTRA VFDIFQEEFI ESLGYHADKI EDGVILKYNV ASEEENGRGY 600 IVSFNQLDRK AECTCCKFEY AGILCRHALR IFFMVGVRNL PEEYIMKRWT MDAVSSVVPD 660 ERSLETGVSF PERLVAWYND LSLDGLTYGM RGAMSPEVYK VAKAALQKAF DDVLAAKYQQ 720 MSEHQDMPLP KSQAKRTHTR A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g49550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g49550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003634 | 0.0 | AP003634.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0655A07. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641723.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 | ||||
TrEMBL | B8B2L1 | 0.0 | B8B2L1_ORYSI; Uncharacterized protein | ||||
STRING | OB06G34800.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-137 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g49550.1 |