![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g47590.1 | ||||||||
Common Name | LOC4341905, Os06g0691100, OSNPB_060691100, P0532H03.9, P0661G04.42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 19923.2 Da PI: 6.5253 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++ a+++l+g LOC_Os06g47590.1 16 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEVAARAYDDAARSLRG 65 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-10 | 16 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.404 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 16 | 74 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.27E-18 | 16 | 72 | No hit | No description |
SMART | SM00380 | 5.4E-34 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-29 | 16 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MRKSKQPQPQ PSPEIRYRGV RKRPSGRYAA EIRDPAKKTP IWLGTFDSAE VAARAYDDAA 60 RSLRGPTART NFPLAAPSAP PPRPPAAAAA AATSSHSSTV ESWSGGAPRA AASALARSAA 120 PMEATQEEDC HSYCGSSSSV LCEDGSDDAA ASRTPLPFDL NMPPPEEELD MAAVADQMGI 180 RYDTLLRL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 16 | 73 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.68698 | 2e-95 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q654Y5 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g47590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g47590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003935 | 0.0 | AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04. | |||
GenBank | AP005457 | 0.0 | AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641022.1 | 1e-132 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | Q654Y5 | 1e-130 | Q654Y5_ORYSJ; Os06g0691100 protein | ||||
STRING | OS06T0691100-00 | 1e-131 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15210.1 | 8e-20 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g47590.1 |
Entrez Gene | 4341905 |