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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g47150.3 | ||||||||
Common Name | ARF10, ARF18, LOC4341882, Os06g0685700, P0009H10.43, P0623A10.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 701aa MW: 75882.2 Da PI: 7.574 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.4e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ + LOC_Os06g47150.3 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--R 216 89****************************996555555..8999*********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++ l+v+++r+ LOC_Os06g47150.3 217 TENGDLCVGIRRA 229 588999****997 PP | |||||||
2 | Auxin_resp | 112.9 | 3.1e-37 | 292 | 375 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ LOC_Os06g47150.3 292 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 375 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 119 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-28 | 124 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.47E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.999 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-32 | 292 | 375 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.401 | 614 | 697 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE 60 FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA 120 QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL 240 PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV RARVRPEEVV EAANLAVSGQ 300 PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF ETEDSSRISW FMGTVSAVQV 360 ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN MPAIHLAPFS PPRKKLCVPL 420 YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG ARHAQFGISL SDLHLNKLQS 480 SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG SPQNNKKSDG KKAPAQLMLF 540 GKPILTEQQI SLGDAASVDV KKSSSDGNAE NTVNKSNSDV SSPRSNQNGT TDNLSCGGVP 600 LCQDNKVLDV GLETGHCKVF MQSEDVGRTL DLSVVGSYEE LYRRLADMFG IEKAELMSHV 660 FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-78 | 20 | 396 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22735 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985531 | 0.0 | ||||
Expression Atlas | Q653H7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g47150.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g47150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100322 | 0.0 | AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644137.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015644138.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0E0Q1T7 | 0.0 | A0A0E0Q1T7_ORYRU; Auxin response factor | ||||
STRING | OS06T0685700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g47150.3 |
Entrez Gene | 4341882 |
Publications ? help Back to Top | |||
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