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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g44750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 28123.8 Da PI: 9.3971 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g LOC_Os06g44750.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-10 | 25 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.52E-24 | 25 | 86 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-18 | 25 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.045 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 26 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-18 | 26 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MKSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ 60 EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV DSILNSDLPV GGGAATRASK FPSDPSLPLP 120 SPAMPPSEKD YWSLLALHYH HHQQQQQQQQ FPASAFDTYG CSSGVNVDFT MGTSSHSGSN 180 SNSSSSSAIW GTAAGAAMGR QQNGGSSNKQ SNSYSGNNIP YAAAAAMTSG SALYGGSTGS 240 NGTWVASNTS TAPHFYNYLF GME* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.21891 | 0.0 | callus| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764288 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g44750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g44750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858843 | 0.0 | HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641575.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | B8B0Y9 | 0.0 | B8B0Y9_ORYSI; Uncharacterized protein | ||||
STRING | OS06T0657500-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-56 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g44750.1 |