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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g44450.1 | ||||||||
Common Name | P0709F06.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 372aa MW: 39190.1 Da PI: 6.616 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 7e-07 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H H +vp+ LOC_Os06g44450.1 53 VWVCEVCEVAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 98 689*****************************44677777888775 PP | |||||||
2 | CCT | 70.3 | 4.7e-24 | 295 | 338 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a LOC_Os06g44450.1 295 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 338 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1 | 10 | 50 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.0E-13 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.381 | 51 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.61E-7 | 54 | 98 | No hit | No description |
Pfam | PF06203 | 8.5E-18 | 295 | 337 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 295 | 337 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MMELRKYWGV GGRRCGACEA SPAAVHCRGC GGVYLCTACD ARPGHARAAH ERVWVCEVCE 60 VAPAAVTCKA DAAVLCAACD ADIHDANPLA RRHARVPVAP IGSAAAAAVA AEAMLFGVAA 120 AGAEAEAVED KAAAEHHHHQ QRQQHGALNL NVEAKDMKLD YLFSDLDPYL NVEFARFPHA 180 DSVVPNGAGA GAAIELDFTC GLGVGVGGAK QSYSSYTATD LAHSGSSSEV GVVPEAMCGG 240 GGAIDLDFTR PKPQPYMPYT ATPPPSHSVV SAQMSSSVVD VGVVPERAAA MGEGREARLM 300 RYREKRKNRR FEKTIRYASR KAYAETRPRI KGRFAKRADH DADDADADAD DPAAVPSSYM 360 LDFGYGVVPS F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7920 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297725142 | 0.0 | ||||
Expression Atlas | Q67WB9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g44450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g44450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406613 | 0.0 | CU406613.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641209.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0E0Q103 | 0.0 | A0A0E0Q103_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1Q484 | 0.0 | I1Q484_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q67WB9 | 0.0 | Q67WB9_ORYSJ; Putative constans | ||||
STRING | ORUFI06G24910.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ORGLA06G0194700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 3e-18 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g44450.1 |