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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g43090.1 | ||||||||
Common Name | LOC4341607, Os06g0637500, OSNPB_060637500, P0523F01.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 33377.3 Da PI: 8.0957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1e-19 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + LOC_Os06g43090.1 15 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 60 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w+ LOC_Os06g43090.1 67 RRPFTAEEDATILRAHARLGNR-WAAIARLLQ-GRTDNAVKNHWN 109 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.746 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-19 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-26 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-16 | 17 | 59 | No hit | No description |
SMART | SM00717 | 6.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.563 | 67 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-11 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGGGGGVEAD CDRIRGPWSP EEDEALRRLV ERHGARNWTA IGREIPGRSG KSCRLRWCNQ 60 LSPQVERRPF TAEEDATILR AHARLGNRWA AIARLLQGRT DNAVKNHWNC SLKRKLAVAT 120 TTTTTTTGAA AAPGVVADAA ELVERPCKRF SPTPDSPSGS GSGSDRSDLS HGGGFGQIFR 180 PVARTGAFEP VDCAISRRQE EDPFTSLSLS LPGTDQRFNH DSAHSHFQEL PSSPSPPPPP 240 PPAAAASTTQ YPFTPEFAAA MQEMIRAEVH KYMASVGVRA GCGDAGGADL HMPQLVEGVM 300 RAAAERVGRM H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-38 | 12 | 116 | 4 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54569 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991187 | 0.0 | ||||
Expression Atlas | Q67WF6 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00400 | DAP | Transfer from AT3G50060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g43090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g43090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105817 | 0.0 | AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence. | |||
GenBank | AK121564 | 0.0 | AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence. | |||
GenBank | AP003573 | 0.0 | AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641187.1 | 0.0 | transcription factor MYB77 | ||||
TrEMBL | A0A0E0HTX5 | 0.0 | A0A0E0HTX5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YFE4 | 0.0 | A2YFE4_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q67WF6 | 0.0 | Q67WF6_ORYSJ; Os06g0637500 protein | ||||
STRING | OS06T0637500-02 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G26080.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 8e-60 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g43090.1 |
Entrez Gene | 4341607 |