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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g41100.1 | ||||||||
Common Name | LOC4341530, Os06g0614100, OsJ_21969, OSNPB_060614100, P0417G12.29, P0691E09.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 452aa MW: 49272.9 Da PI: 8.9879 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.4 | 2.7e-12 | 149 | 177 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le+ LOC_Os06g41100.1 149 KTLRRLAQNREAARKSRLRKKAYIQQLET 177 7789***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-9 | 143 | 189 | No hit | No description |
SMART | SM00338 | 1.2E-5 | 145 | 217 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.565 | 147 | 176 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.5E-7 | 149 | 179 | No hit | No description |
Pfam | PF00170 | 2.5E-9 | 149 | 177 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 152 | 167 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.2E-25 | 226 | 300 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MAYPSTSGMI QASSSLHGSI TRRNPEGYDM PSDLDQALLL YFDGQEQDKP STQEEPHKPL 60 NFVKETLNIF PSQPMDGEPT PTPKASMSAP PIAGFSRRSP APAAADGRPL TLGKTSKAAF 120 KKEGGSGSGG AMAASASSEL KGPKTPDPKT LRRLAQNREA ARKSRLRKKA YIQQLETGRI 180 RLAHLEQEIQ FTRAQGAFCG AGILSPDAAL FNLEYERWQE AHHQVISRLR AAVEEHRPDG 240 ELQPHVDEAM SHYGVLMAHK ARLVGADPLH LLSGLWKGAV EQCFLWIGGF RPSELIKVVV 300 RHVEPLTEQQ LAAVYSAQQA ARQEEDALDG GLQALLRSLS DVVSSSDAPS SSQQTPPVMY 360 HPSAAAAMAA ASFMGQYGSY SNLQLAMDKL ANLAIFLRQA DEERMRTLHA LRRMLTVRQA 420 ARCFVAVDDY FGRLRALALF WTTTRPHPAA G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50121 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q69T21 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g41100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g41100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119909 | 0.0 | AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644001.1 | 0.0 | transcription factor TGAL8 isoform X2 | ||||
Swissprot | Q69T21 | 0.0 | TGAL8_ORYSJ; Transcription factor TGAL8 | ||||
TrEMBL | B8B4L8 | 0.0 | B8B4L8_ORYSI; Uncharacterized protein | ||||
STRING | OS06T0614100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12972 | 21 | 26 | Representative plant | OGRP16996 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 3e-94 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g41100.1 |
Entrez Gene | 4341530 |
Publications ? help Back to Top | |||
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