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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g36930.1 | ||||||||
Common Name | HSF17, HSFA6A, Os06g0565200, OsJ_020873, P0513E02.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 332aa MW: 36103.3 Da PI: 4.6358 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98.3 | 7.3e-31 | 44 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k++e++ed++++ ++sw + nsfvv+d++ fa +Lp +Fkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++l LOC_Os06g36930.1 44 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHL 127 9********************9899******************************************99.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l +i+r+++ LOC_Os06g36930.1 128 LANIRRRRR 136 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.5E-29 | 40 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-50 | 40 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-32 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.3E-16 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-26 | 44 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-16 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-16 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDYSTVKQEE VEVVVLDGEE EAAAAAAPVP LPAAMGVGAA VAPFLVKTFE MVEDPATDAV 60 VSWGGAARNS FVVWDPHAFA AGLLPLHFKH ANFSSFLRQL NTYGFRKVSA DRWEFANEDF 120 LGGQRHLLAN IRRRRRGAGT GSTTPRAVNC GGGGGEGEVE RLRRDKEALA RELARLRRQQ 180 QEARAQLLDM ERRVRGTERR QEQCTEFLAR ALRSPDVLDN IARRHAAAVE RKKRRMLAAA 240 ADDDGLTFEA LALAAAADTS HSTGGAVTTD MIWYELLGEE QAEIDIEVDQ LVASASAAAD 300 TASEAEPWEE MGEEEVQELV QQIDCLASPS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-20 | 35 | 134 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-20 | 35 | 134 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-20 | 35 | 134 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115468579 | 0.0 | ||||
Expression Atlas | Q5Z6A4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g36930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g36930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005456 | 0.0 | AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881831.1 | 0.0 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025881832.1 | 0.0 | putative heat stress transcription factor A-6a | ||||
Refseq | XP_025881833.1 | 0.0 | putative heat stress transcription factor A-6a | ||||
Swissprot | Q5Z6A4 | 0.0 | HFA6A_ORYSJ; Putative heat stress transcription factor A-6a | ||||
TrEMBL | A2YE60 | 0.0 | A2YE60_ORYSI; Uncharacterized protein | ||||
STRING | OS06T0565200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP14032 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 7e-47 | heat shock transcription factor A7A |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g36930.1 |
Publications ? help Back to Top | |||
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