PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g36680.1
Common NameLOC4341309, Os06g0562300, OSNPB_060562300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 546aa    MW: 55697.1 Da    PI: 6.507
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g36680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-084695061954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  LOC_Os06g36680.1 469 FENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 506
                       7766689*****************************88 PP
2BELL21.94.4e-083394041072
              BELL  10 akLlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +L +ll+ Vd++ +q+ve++q  ++ F+ +   +g g   + +++A +a++  +r ++ ++++q+
  LOC_Os06g36680.1 339 QRLRKLLQLVDEKCNQCVEEMQSTAARFNSMvrsTGGGGGGLTAAFAGRAVAAAYRRVRRRVMGQL 404
                       578899999*******************9873446889999*********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.7E-13274400IPR006563POX domain
PROSITE profilePS5007111.791447510IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-25449522IPR009057Homeodomain-like
SuperFamilySSF466892.1E-15450519IPR009057Homeodomain-like
SMARTSM003895.4E-7450514IPR001356Homeobox domain
CDDcd000861.16E-11450511No hitNo description
PfamPF059201.4E-15467506IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSTSSNPSYH QLGLDAISCC FVAGGGGAEA AAPFFGFGFG DVDGEFLVAS PVAAVGDELA  60
CAVPLRRPQG SVSEEEVNAA AVAAAAAGGA ESCSTVHSVL GSVEFGCGTS SGVTIAQASR  120
MGRLAGEAPC GDAGGGGWIY GGSGIAPLHG AYYLSGFSSG AGAGFLSPFA ASSVAAAAPA  180
ASELSLRLGA TKCSSPSSMA NASSEVSCSG LTHVSSGGGL GYHQAAAAGA GAALFHPTHG  240
DDAAAAAAGE LRQAYHSRAP PHFSQVVSRS AVLAHVAQEL LNGFVACLLQ DVAADAASGV  300
DGGEASQALS SGFSARITTA PTEDASPGSG GARWAAEAQR LRKLLQLVDE KCNQCVEEMQ  360
STAARFNSMV RSTGGGGGGL TAAFAGRAVA AAYRRVRRRV MGQLVAAATA RSSSSAAAAA  420
LEEKERSWES SFIQKHWAMQ QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE NFLRPYPKDS  480
EKDMLAARSG LSRSQVSNWF INARVRLWKP MIEDMYEELK KTSGGSDGAA EIEHLSSKDV  540
LSLES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.830980.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0DBI4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g36680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g36680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037140.0AP003714.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0656E03.
GenBankAP0037620.0AP003762.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0456F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641753.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_015641754.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_025882414.10.0BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A0E0PZ640.0A0A0E0PZ64_ORYRU; Uncharacterized protein
TrEMBLQ0DBI40.0Q0DBI4_ORYSJ; Os06g0562300 protein
STRINGORUFI06G19620.10.0(Oryza rufipogon)
STRINGOS06T0562300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-49homeobox gene 1