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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g36000.1 | ||||||||
Common Name | P0427B07.36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 27366.6 Da PI: 4.5754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.4e-18 | 52 | 98 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ LOC_Os06g36000.1 52 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 98 69****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-33 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 52 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 52 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 52 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-21 | 52 | 109 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.28E-18 | 53 | 109 | No hit | No description |
PRINTS | PR00367 | 3.8E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MPMPEYELAA CSPASPSSSA SSTSTPPSPG GEAAARCGEK RGRGGGGGRH PTYRGVRMRA 60 WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALVVK GPAAVLNFPG AAASLPRPAS 120 AAPRDVQAAA ARAAAMALDA VVPAPPSPPP PLMPPQASPS EAARAHALVA QVDQDDDDEE 180 LEEIVELPPI DELDAAAELV FASSGATTFH YDPAADQPWY DQPAACLQDG GGGGIAVHDA 240 LGFELDHVWA DGVVASGFGA LLWNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 45 | 109 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5Z9C9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g36000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g36000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 0.0 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642814.2 | 0.0 | dehydration-responsive element-binding protein 3 | ||||
TrEMBL | Q5Z9C9 | 0.0 | Q5Z9C9_ORYSJ; Putative Ap21 | ||||
STRING | ORUFI06G19350.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27173 | 3 | 3 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g36000.1 |