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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g32860.1 | ||||||||
Common Name | LOC4341164, Os06g0520600, OSJNBa0077L03.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 712aa MW: 80907.8 Da PI: 6.383 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 45 | 70 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+G +C ++H+ LOC_Os06g32860.1 45 PGEPDCSYYVKFGSCKFGISCVYNHP 70 5789*********************9 PP | |||||||
2 | zf-CCCH | 29 | 1.8e-09 | 91 | 117 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ ++G Ck+G +C+F+H+p LOC_Os06g32860.1 91 PGEPDCSYYVKFGSCKFGMNCRFNHPP 117 5789*********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 158 | 183 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G +CkF H+ LOC_Os06g32860.1 158 PGTGLCSYYMNRGICKFGTNCKFDHP 183 5799*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.648 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 92 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.1E-6 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 158 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 160 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF48371 | 2.88E-30 | 380 | 540 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.40.180 | 6.1E-30 | 380 | 539 | IPR016021 | MIF4G-like domain |
SMART | SM00543 | 2.2E-4 | 384 | 637 | IPR003890 | MIF4G-like, type 3 |
Pfam | PF02854 | 5.1E-21 | 385 | 543 | IPR003890 | MIF4G-like, type 3 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK 60 FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP 120 VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF 180 DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQRISY 240 TRDQLLQLCQ NVEVPKDILK FCQDINVELN GEDKISGFGA EKDHVQTPSY KRFDATDSRD 300 WHSWSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQW LKFIKCTPCK 360 STLIKAEVPL SIQRGIISGK DEVLKTLKSI LNTFSPKMFD LQKGQLIETR ISSADILKDV 420 INLIFEKVVA EPAFCSTYAQ LCTYLNQNLT PFPPEDCDCE EITFKQALSN KCQEIFESAH 480 TVCSEIGKLI GQDREMEQRD KERVVKLETL GNINFIRALL KKKLITNKII DHIVQAVMDC 540 CKFRFEPLGK VDLLNIIFEG MLDSDSAGDE SNICVNAMIG GNKSSIASND VEMTRKNVNR 600 QNEEAILQKS YDEVPNNKMD PQKNYADGAI SYLIEKEKPT NLESSVRICR GGCSISEIME 660 LVVDAGAVEG SDEHFMATLL FIKPEYREIF LTLDTREGRL GWLKRMYKVK E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hu3_A | 3e-12 | 382 | 538 | 10 | 175 | EIF4GII |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54047 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986719 | 0.0 | ||||
Expression Atlas | Q5Z5Q3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g32860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g32860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101510 | 0.0 | AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641849.1 | 0.0 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_025882269.1 | 0.0 | zinc finger CCCH domain-containing protein 43 | ||||
Swissprot | Q5Z5Q3 | 0.0 | C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A0E0J7P6 | 0.0 | A0A0E0J7P6_ORYNI; Uncharacterized protein | ||||
STRING | OS06T0520600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14330 | 13 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 5e-31 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g32860.1 |
Entrez Gene | 4341164 |
Publications ? help Back to Top | |||
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