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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g30860.1 | ||||||||
Common Name | WRKY31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 36614.3 Da PI: 4.2895 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.1 | 3.3e-27 | 177 | 232 | 3 | 57 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++ tY+g H LOC_Os06g30860.1 177 DLWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRFDPSFLLLTYTGAHS 232 99*************************99**************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-27 | 161 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.554 | 170 | 237 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-23 | 170 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-31 | 175 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-22 | 177 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDGDAWWYPG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP 60 MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ TGGGWGDQAP MVVDELCGAL VVAPPPPPKQ 120 QEVLQVQQQP PPADNTQPTT YQQGSGGDGE STRAGGSRKK QTRKEVVRVA ASGPAPDLWA 180 WRKYGQKPIK GSPYPRGYYR CSSNKNCAAR KQVERCRFDP SFLLLTYTGA HSGHDVPLHR 240 NSLAGTTRHK PPPPPPLPSA ADKSPATAAE AATASQSPGL SPTTPLRASS MELHGEDDAE 300 AELQVEEDDM AIDDEDDDDV ADETISTVPW GTPISDAIIA ASYEWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-15 | 177 | 237 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6IEQ0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g30860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g30860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003951 | 0.0 | AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881961.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | Q6IEQ0 | 0.0 | Q6IEQ0_ORYSJ; WRKY transcription factor 31 | ||||
STRING | ORGLA06G0135400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12562 | 25 | 36 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-36 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g30860.1 |
Publications ? help Back to Top | |||
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