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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g30090.1 | ||||||||
Common Name | B1089G05.30, LOC107276693, Os06g0496400, OsJ_21438, OSNPB_060496400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 30898.2 Da PI: 5.4958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.2e-08 | 199 | 245 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + + + RR+ri +++ L+el+P+ +K++ +++L +A+ Y+k +q LOC_Os06g30090.1 199 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYVKFMQ 245 56677899*****************98.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.81E-11 | 193 | 249 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-12 | 193 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 194 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.526 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 199 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-9 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAMVAGDEAM SVPWHDVGVV VDPEAAGTAP FDAGAGYVPS YGQCQYYYYY DDHHHHPCST 60 ELIHAGDAGS AVAVAYDGVD GWVHAAAAAT SPSSSSALTF DGHGAEEHSA VSWMDMDMDA 120 HGAAPPLIGY GPTAATSSPS SCFSSGGSGD SGMVMVTTTT PRSAAASGSQ RRARPPPSPL 180 QGSELHEYSK KQRANNKETQ SSAAKSRRER ISERLRALQE LVPSGGKVDM VTMLDRAISY 240 VKFMQMQLRV LETDAFWPAS DGATPDISRV KDALDAIILS SSSPSQKASP PRSG* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q651K2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g30090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g30090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836278 | 0.0 | CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642667.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like | ||||
TrEMBL | Q651K2 | 0.0 | Q651K2_ORYSJ; BHLH protein-like | ||||
STRING | OS06T0496400-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18801 | 8 | 8 | Representative plant | OGRP3532 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 9e-36 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g30090.1 |
Entrez Gene | 107276693 |