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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g21390.2 | ||||||||
Common Name | LOC4340884, MKRN, Os06g0318700, OsJ_21146, P0468A12.33, P0592B08.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 41673.2 Da PI: 7.764 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.9e-07 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ LOC_Os06g21390.2 4 KRVLCKFFMH-GACLKGEYCEFSHD 27 89****8888.*************5 PP | |||||||
2 | zf-CCCH | 28.4 | 2.9e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ LOC_Os06g21390.2 35 VCTFYQK-GSCSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 24.7 | 4e-08 | 151 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa++G C+yG+ C+ +Hg LOC_Os06g21390.2 151 PICS-FAAGGNCPYGEECPQMHG 172 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15663 | 1.1E-7 | 1 | 61 | No hit | No description |
SMART | SM00356 | 1.8E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 31 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.713 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 151 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.12E-12 | 204 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.8E-10 | 209 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 9.63E-4 | 215 | 275 | No hit | No description |
PROSITE profile | PS50089 | 12.297 | 216 | 274 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.1E-7 | 216 | 273 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.7E-7 | 216 | 273 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 240 | 249 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.0047 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 304 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016874 | Molecular Function | ligase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MSTKRVLCKF FMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGSCSYGSRC RYDHVKVSRN 60 PTVAPPPSSS TTTRASSSLQ PLSFGRPHHV GYQADSSNPR QQISMDVLAH SGSKPVWRND 120 FQHESVLEDG IDWSISPTVQ NQTTLSPADL PICSFAAGGN CPYGEECPQM HGDLCTTCGK 180 MCLHPYRPDE REEHTKLCEK NHKRLESLKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC 240 DHPFCISCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKLEIIDNY 300 KAKLKSIDCK YFDFGTGTCP FGSSCFYKHA YRDGRLEEVI LRHLDADDGS TVIAKNIRLS 360 DFLSRLHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | ESLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26343 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989873 | 0.0 | ||||
Expression Atlas | Q5ZA07 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g21390.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g21390 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120250 | 0.0 | AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643585.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A0D3GFY1 | 0.0 | A0A0D3GFY1_9ORYZ; Uncharacterized protein | ||||
STRING | OS06T0318700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-152 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g21390.2 |
Entrez Gene | 4340884 |
Publications ? help Back to Top | |||
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