![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g19444.2 | ||||||||
Common Name | LOC4340812, Os06g0298200, OSNPB_060298200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 43807.7 Da PI: 4.8779 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.1e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ LOC_Os06g19444.2 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6*****************************657888889876 PP | |||||||
2 | zf-B_box | 24.3 | 6.5e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + lC++C ++H+ H++++ LOC_Os06g19444.2 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89 7*****************************6688899999876 PP | |||||||
3 | CCT | 64.9 | 2.4e-22 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ LOC_Os06g19444.2 350 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.94 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.12E-8 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.859 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-5 | 47 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.04E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.27 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.388 | 350 | 392 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.8E-17 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence Send to blast |
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL 180 PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE 240 QLFDDAGIDS YFESKEIPSG NSDEPKLMQP VTSNAVSADS GMSIPGAKGD SSLCIPVRQA 300 RSSISLSFSG LTGESSAGDY QDCGVSPVLL MGEPPWHPPG PEGSFAGATR DDAITRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LCETRSY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.12977 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q0DCR8 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g19444.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g19444 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ858802 | 0.0 | HQ858802.1 Oryza sativa Indica Group isolate UT1180 C2C2-CO-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644313.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-128 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | F1DK44 | 0.0 | F1DK44_ORYSI; C2C2-CO-like transcription factor (Fragment) | ||||
TrEMBL | Q0DCR8 | 0.0 | Q0DCR8_ORYSJ; Os06g0298200 protein | ||||
STRING | OGLUM06G12660.2 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI06G12310.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0298200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G13380.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART06G11710.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 4e-95 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g19444.2 |
Entrez Gene | 4340812 |