PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g19444.1
Common NameLOC4340812, Os06g0298200, OSNPB_060298200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 409aa    MW: 43935.9 Da    PI: 4.8779
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g19444.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  LOC_Os06g19444.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                      6*****************************657888889876 PP
2zf-B_box24.36.5e-084789541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+++ ++++   C   +  lC++C  ++H+       H++++
  LOC_Os06g19444.1 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                      7*****************************6688899999876 PP
3CCT64.92.4e-22351394144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LOC_Os06g19444.1 351 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 394
                       899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000215.14E-8447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
PfamPF006432.5E-54790IPR000315B-box-type zinc finger
CDDcd000217.07E-64790No hitNo description
SMARTSM003360.274890IPR000315B-box-type zinc finger
PfamPF062033.8E-17351393IPR010402CCT domain
PROSITE profilePS5101715.388351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL  180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKG DSSLCIPVRQ  300
ARSSISLSFS GLTGESSAGD YQDCGVSPVL LMGEPPWHPP GPEGSFAGAT RDDAITRYKE  360
KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCETRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KKKRR
2360365KKKRRK
3361365KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.129770.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB7EN35
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g19444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g19444
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0988650.0AK098865.1 Oryza sativa Japonica Group cDNA clone:J013001A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644311.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D3GFM30.0A0A0D3GFM3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A8H70.0A0A0E0A8H7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HPB00.0A0A0E0HPB0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PWP30.0A0A0E0PWP3_ORYRU; Uncharacterized protein
TrEMBLB7EN350.0B7EN35_ORYSJ; Os06g0298200 protein
STRINGOGLUM06G12660.20.0(Oryza glumipatula)
STRINGORUFI06G12310.20.0(Oryza rufipogon)
STRINGOS06T0298200-010.0(Oryza sativa)
STRINGONIVA06G13380.10.0(Oryza nivara)
STRINGOBART06G11710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.17e-95B-box type zinc finger protein with CCT domain