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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g16400.1 | ||||||||
Common Name | OsJ_20959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 47089.4 Da PI: 6.3661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 269 | 317 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq LOC_Os06g16400.1 269 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 317 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-17 | 264 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-10 | 264 | 321 | No hit | No description |
PROSITE profile | PS50888 | 15.516 | 266 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-17 | 267 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 269 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-10 | 272 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALTSMA NPFPIPPGLW 60 NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG 120 IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG 180 GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK 240 SSGKQIKDNA GSPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT 300 GKAVMLDEII NYVQSLQRQV EFLSMKLASV NPTLDFNIER ILSKDIFQCR GTTASSAFGF 360 FPDIVHPRLH PPKYTQVGMP SIVNPTDAFG RVIHAPLGTN SAFKEPKHQM PNNLNGEFQD 420 VIEMPFTHDH HGSNDQP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 198 | KKRKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32526 | 0.0 | callus| flower| leaf| panicle| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32989062 | 0.0 | ||||
Expression Atlas | B9FSQ6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g16400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g16400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103853 | 0.0 | AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643533.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
Refseq | XP_015643534.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | B9FSQ6 | 0.0 | B9FSQ6_ORYSJ; Uncharacterized protein | ||||
STRING | OS06T0275600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14624 | 19 | 23 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g16400.1 |