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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g14190.1 | ||||||||
Common Name | LOC4340659, P0046H10.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-X1 | ||||||||
Protein Properties | Length: 962aa MW: 103886 Da PI: 7.9232 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.8 | 4.1e-07 | 231 | 248 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq +CH+GpC++C LOC_Os06g14190.1 231 CGNHACQDICHPGPCGEC 248 ****************** PP | |||||||
2 | zf-NF-X1 | 22.9 | 1.8e-07 | 289 | 306 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC LOC_Os06g14190.1 289 CGVHRCKVTCHEGDCPPC 306 ****************** PP | |||||||
3 | zf-NF-X1 | 16.6 | 1.7e-05 | 384 | 402 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC LOC_Os06g14190.1 384 CGQHGCQLLCHSGHCPPCL 402 ******************6 PP | |||||||
4 | zf-NF-X1 | 18.9 | 3.2e-06 | 494 | 510 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C++ CH+ pC+p LOC_Os06g14190.1 494 CGMHACNRSCHPSPCDP 510 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00438 | 0.023 | 112 | 130 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.1 | 114 | 129 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.07E-11 | 157 | 205 | No hit | No description |
Pfam | PF01422 | 0.014 | 167 | 184 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0019 | 167 | 186 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.59E-8 | 221 | 264 | No hit | No description |
Pfam | PF01422 | 1.1E-4 | 231 | 248 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.3E-4 | 231 | 250 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.81E-13 | 279 | 327 | No hit | No description |
Pfam | PF01422 | 4.7E-6 | 289 | 306 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.001 | 289 | 308 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.90E-8 | 374 | 426 | No hit | No description |
Pfam | PF01422 | 0.0015 | 384 | 401 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 7.2E-4 | 384 | 403 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.62 | 441 | 459 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0021 | 494 | 510 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.029 | 494 | 529 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.7 | 531 | 557 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.16 | 538 | 559 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 962 aa Download sequence Send to blast |
MICYDMVRRS APVWSCGSCF SIFHLPCIRK WARSPASAAD ASDPDSSWRC PGCQSVHAVP 60 ARELAYTCFC GRRREPPNDL FLTPHSCGEP CSKPLEKADP AVKADDAAAT RCPHVCVLQC 120 HPGPCPPCKA FAPDRLCPCG KQTIVRRCAD RTTPVTCGQR CDRLLPCRRH RCEKVCHTGP 180 CGDCNVLISA RCFCGKKTET LLCGEMELKG NLSEKDGVFS CSEACSHMLS CGNHACQDIC 240 HPGPCGECEL MPGKVTACHC GKTRLLEKRA SCLDPIPTCD KVCDKKLPCG VHRCKVTCHE 300 GDCPPCVVRV EQRCRCGSSG QMVECYKVLE EEFRCNKPCG RKKNCGRHRC SECCCPLSKP 360 LARLEGGNWD PHLCQIPCGK KLRCGQHGCQ LLCHSGHCPP CLETIFNDLT CACGRTSIPP 420 PLPCGTPTPS CPHQCLVPQP CGHPATHQCH FGDCPPCVVP VMRECIGGHV VLRNIPCGSK 480 DIRCNQPCGK NRQCGMHACN RSCHPSPCDP PPANGDASSS TGGRASCGQV CGAPRRECKH 540 TCTAPCHPSS PCPDLRCEFP MTIACSCGRI TATVPCSAGG TANGDNMFEV SIIQKLPMPL 600 QPVESDGRRV PLGQRKLSCD EDCAKMERKR VLAEAFDITP PNLDALHFGE NSNASDLLSD 660 LFRREPKWVM AIEERCKFLV LGKTRGNSSG NLKVHVFCHM TKDKRDAIRV IADRWKLSVQ 720 AAGWEPKRFI TIHPTPKSKA PARILGSKPG VFVAASHPFF DPLVDMDPRL VVAMLDLPRD 780 ADVSALVLRF GGECELVWLN DKNAVAVFND PARAATALRR LDYGSAYQGA AVFLPSSSAQ 840 PGNVWVAGQK DGVAATKSSA NPWKKATASE PDPSSGDWTG VLGQAPGSVW RRGGDTVAQV 900 MGTSNRWNAL ESDAATSSRP VEESKPAPRT DAVSSAGPST APPVSKMQPE VEVDDWEEAC 960 E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17665 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 29367530 | 0.0 | ||||
Expression Atlas | Q652W3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g14190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g14190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005518 | 0.0 | AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643844.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | Q652W3 | 0.0 | Q652W3_ORYSJ; Putative TF-like protein | ||||
STRING | ONIVA06G11110.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 | Representative plant | OGRP3950 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g14190.1 |
Entrez Gene | 4340659 |
Publications ? help Back to Top | |||
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