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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g11970.1 | ||||||||
Common Name | LOC4340529, mads63, Os06g0223300, OsJ_20643, OSNPB_060223300, P0638H11.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 361aa MW: 40068 Da PI: 4.3965 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.2 | 3.4e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l +s LOC_Os06g11970.1 9 KRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.30E-35 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-28 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRVKLQIKR IENIPNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR 60 RRIEDVLTRY INLPESDRGG TIQNREYLIN MLTQLKCESD VTEDLTNTSS KAPVNSNIEE 120 LQQEIRRCQH QMQLTEEQLR MFEPDPARSA SMEDVEASEK FIAGILSRVE ERKRYLLCSM 180 GSFDVTASTS AMQHLYLPQQ HQHGDITDNG FGSDEVASWV SEGMPPTTSS VASIFAGTSD 240 SMMSFRDQAV YDTMRQDACV DQTVVPEMGM CHVDQQNQSD DWQAYTSAEF LNALIPPTPF 300 PLDDEDTMGP MLASSPLLMP GIHDQQPPVE DMATAGCSQA PANDGNGLYA AEDIAPVNVG 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-16 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49822 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988439 | 0.0 | ||||
Expression Atlas | Q67UI9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g11970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g11970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111776 | 0.0 | AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence. | |||
GenBank | FN663130 | 0.0 | FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641968.2 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | Q67UI9 | 0.0 | Q67UI9_ORYSJ; MADS63 protein | ||||
STRING | OS06T0223300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 6e-74 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g11970.1 |
Entrez Gene | 4340529 |
Publications ? help Back to Top | |||
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