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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g10880.1 | ||||||||
Common Name | OsJ_20562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 325aa MW: 34770.8 Da PI: 5.6074 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.4 | 3.7e-14 | 244 | 296 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkev 56 +r+rr++kNRe+A rsR+RK+a+i eLe +v++L+++ +L+k ++e+++k+ LOC_Os06g10880.1 244 RRQRRMIKNRESAARSRARKQAYIMELEAEVAKLKEQKAELQKkQVEMIQKQN 296 79*************************************99741455555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-13 | 240 | 305 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.657 | 242 | 287 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.39E-10 | 244 | 294 | No hit | No description |
Pfam | PF00170 | 1.2E-11 | 244 | 296 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.70E-24 | 244 | 291 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-14 | 244 | 300 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 247 | 262 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MELPADGSAL ARQGSIYSLT FDEFQSALGS AEKDFGSMNM DELLRNIWTA EESQAIAPAA 60 AAASAAAVVG DAQQQQQPIQ RQGSLTLPRT LSQKTVDEVW RDIMGLGGSD DEDPAAAAAA 120 AAPAQRQPTL GEMTLEEFLV RAGVVREDMG QTIVLPPQAQ ALFPGSNVVA PAMQLANGML 180 PGVVGVAPGA AAAMTVAAPA TPVVLNGLGK VEGGDLSSLS PVPYPFDTAL RVRKGPTVEK 240 VVERRQRRMI KNRESAARSR ARKQAYIMEL EAEVAKLKEQ KAELQKKQVE MIQKQNDEVM 300 ERITQQLGPK AKRFCLRRTL TGPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54299 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988397 | 0.0 | ||||
Expression Atlas | B9FS56 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, leaves, flag leaves, stems, flowers and panicles (PubMed:20576316). Widely expressed (PubMed:21546455). {ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid (ABA) signaling pathway (PubMed:20576316, PubMed:19947981, PubMed:21546455, PubMed:22301130, PubMed:26300907, PubMed:27468891). Transcription factor activity is fully activated by ABA (PubMed:19947981, PubMed:26300907, PubMed:27468891). Acts as positive regulator of the expression of abiotic stress-responsive genes through an ABA-dependent signaling pathway (PubMed:20576316). Acts as positive regulator of ABA signaling and drought stress tolerance (PubMed:22301130). Plays an important role in ABA and auxin responses. Involved in ABA signaling and stress responses by directly binding to the ABA-responsive element (ABRE)-containing genes, especially WRKY family genes. Modulates response to auxin. Suppresses auxin signaling by targeting ABRE-containing genes related to auxin metabolism or signaling (PubMed:21546455). {ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455, ECO:0000269|PubMed:22301130, ECO:0000269|PubMed:26300907, ECO:0000269|PubMed:27468891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g10880.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:20576316, PubMed:18315698, PubMed:21546455, PubMed:22301130). Induced by auxin (PubMed:21546455, PubMed:22301130). Induced by gibberellin (PubMed:21546455). Induced by salt and drought stresses (PubMed:20576316, PubMed:21546455, PubMed:22301130). Induced by cold stress (PubMed:20576316). Induced by oxidative stress (PubMed:20576316, PubMed:22301130). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455, ECO:0000269|PubMed:22301130}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g10880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103188 | 0.0 | AK103188.1 Oryza sativa Japonica Group cDNA clone:J033121M03, full insert sequence. | |||
GenBank | AK105312 | 0.0 | AK105312.1 Oryza sativa Japonica Group cDNA clone:001-117-D06, full insert sequence. | |||
GenBank | GU552783 | 0.0 | GU552783.1 Oryza sativa Japonica Group putative expressed bZIP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640996.1 | 0.0 | bZIP transcription factor 46-like | ||||
Swissprot | Q69TW5 | 0.0 | BZP46_ORYSJ; bZIP transcription factor 46 | ||||
TrEMBL | B9FS56 | 0.0 | B9FS56_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI12G20810.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 | Representative plant | OGRP540 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 6e-36 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g10880.1 |