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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g05890.1 | ||||||||
Common Name | LOC4340156, Os06g0152200, OsJ_20154, OSNPB_060152200, P0529C07.33, P0710H01.45 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 361aa MW: 38395.7 Da PI: 5.1743 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.5e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC C +e H H++vpl LOC_Os06g05890.1 4 QCNACGAAEARVLCCADEAALCTACDEEVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29.8 | 1.2e-09 | 63 | 95 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H LOC_Os06g05890.1 63 VPKCDICQEASGYFFCLEDRALLCRDCDVSIHT 95 589*****************************3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.07E-8 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.7E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.0E-16 | 61 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-9 | 64 | 108 | No hit | No description |
Pfam | PF00643 | 1.8E-7 | 64 | 95 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.717 | 66 | 108 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKIQCNACGA AEARVLCCAD EAALCTACDE EVHAANKLAG KHQRVPLLSD DGGAAPAAAA 60 PAVPKCDICQ EASGYFFCLE DRALLCRDCD VSIHTVNSFV SVHQRFLLTG VQVGLDPADP 120 VPPVADKHVK SAGGSVDSAT KHLQRNPTDL SGENSASLPS QNVINGNYSR QSSVTMAKTG 180 QVNWTMSNNT IRSIDPPPKY SSEESPALLL ASHTSTMAAY SSQISKDSDR IYNLPFTGGN 240 GSDSLHDWHV DEFFSNSEFG FAEHGSSKGD NAKPGSAGGS PQCRLAEGLF VEGLLGQVPD 300 NPWTVPEVPS PPTASGLYWQ NNLLCPSYDS TMFVPEISSL ENSQNNFTVS AGLKRRRRQF 360 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3398 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982254 | 0.0 | ||||
Expression Atlas | O82116 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g05890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g05890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001886 | 0.0 | AB001886.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R2931. | |||
GenBank | AK072231 | 0.0 | AK072231.1 Oryza sativa Japonica Group cDNA clone:J023001E21, full insert sequence. | |||
GenBank | AK104083 | 0.0 | AK104083.1 Oryza sativa Japonica Group cDNA clone:001-029-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644333.1 | 0.0 | B-box zinc finger protein 22 | ||||
TrEMBL | A2Y9G2 | 0.0 | A2Y9G2_ORYSI; Uncharacterized protein | ||||
TrEMBL | O82116 | 0.0 | O82116_ORYSJ; Os06g0152200 protein | ||||
STRING | OS06T0152200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-55 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g05890.1 |
Entrez Gene | 4340156 |
Publications ? help Back to Top | |||
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